Factsheet for Zm00001d016619_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30298	Sorghum	mitochondrion	95.22	95.22
CDY09795	Canola	cytosol	45.96	92.59
Os02t0520800-01	Rice	mitochondrion	87.5	87.5
TraesCS6D01G187400.1	Wheat	mitochondrion	85.66	86.3
TraesCS6B01G229200.1	Wheat	mitochondrion	85.29	85.93
TraesCS6A01G202900.1	Wheat	mitochondrion	82.72	85.23
Zm00001d025286_P001	Maize	mitochondrion	84.56	84.25
GSMUA_Achr3P19600_001	Banana	cytosol	65.07	78.67
CDX69642	Canola	mitochondrion	69.12	77.37
Solyc11g039840.1.1	Tomato	plastid	73.9	75.85
PGSC0003DMT400041105	Potato	mitochondrion	73.9	75.85
KRH08411	Soybean	mitochondrion	72.79	75.0
GSMUA_AchrUn_...	Banana	mitochondrion	75.74	74.91
GSMUA_Achr5P21560_001	Banana	mitochondrion	75.74	74.64
KRH70065	Soybean	nucleus	71.32	73.21
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	73.9	73.09
KRH70066	Soybean	mitochondrion	71.32	72.93
AT5G13430.1	Thale cress	mitochondrion	72.06	72.06
CDX70502	Canola	mitochondrion	71.69	71.43
CDX91122	Canola	mitochondrion	70.96	71.22
CDX85651	Canola	mitochondrion	71.69	71.17
CDY09798	Canola	mitochondrion	70.59	70.85
CDX78520	Canola	mitochondrion	71.69	70.65
CDX85650	Canola	mitochondrion	70.96	70.44
Bra023411.1-P	Field mustard	mitochondrion	70.96	70.44
Bra006199.1-P	Field mustard	mitochondrion	70.96	70.44
VIT_14s0068g01030.t01	Wine grape	mitochondrion	70.96	70.44
CDX78521	Canola	mitochondrion	69.85	70.37
CDY16491	Canola	mitochondrion	70.22	70.22
Bra008830.1-P	Field mustard	mitochondrion	70.22	70.22
Bra023412.1-P	Field mustard	mitochondrion	70.59	70.07
AT5G13440.1	Thale cress	mitochondrion	70.59	70.07
CDX70503	Canola	mitochondrion	70.59	69.82
Bra006198.1-P	Field mustard	mitochondrion	70.59	69.31
CDX91123	Canola	cytosol	71.69	44.52

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100192468	Gene3D:2.102.10.10	MapMan:2.4.3.4	ProteinID:AQK71309.1	UniProt:B4F892
EMBL:BT033330	EMBL:BT034451	EMBL:BT043038	EMBL:EU963349	EMBL:EU964044	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006810	GO:GO:0008121
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016679
GO:GO:0022900	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600	InterPro:IPR017941
InterPro:IPR036922	PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF17	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM
SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416	UniParc:UPI00017B6012	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	EnsemblPlantsGene:Zm00001d016619
EnsemblPlants:Zm00001d016619_P001	EnsemblPlants:Zm00001d016619_T001	SEG:seg	:	:	:

Description

Ubiquinol-cytochrome c reductase iron-sulfur subunit

Coordinates

chr5:+:170323276..170326850

Molecular Weight (calculated)

29685.5 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.131

Length

272 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SALAWRPAAA ASGSRGPLAG TLPGRDDDDT RDCRARFAIE SPFFAAARGF SAETLAPRNQ DVGLSELPAT VAAVKNPSGK IVYDEYNHER
101: YPPGDPSKRA FAYFVLSGGR FIYASLLRLL VLKFVLSMSA SKDVLALASL EVDLSSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV ASLRHPEQDA
201: ERVKNPEWLV VIGVCTHLGC IPLPNAGDFG GWFCPCHGSH YDISGRIRKG PAPFNLEVPT YSFLEENKLL IG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.