CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70065	Soybean	nucleus	96.24	96.6
KRH08411	Soybean	mitochondrion	92.11	92.8
CDY09795	Canola	cytosol	46.99	92.59
GSMUA_Achr3P19600_001	Banana	cytosol	66.17	78.22
CDX69642	Canola	mitochondrion	70.68	77.37
Solyc11g039840.1.1	Tomato	plastid	73.31	73.58
PGSC0003DMT400041105	Potato	mitochondrion	73.31	73.58
VIT_14s0068g01030.t01	Wine grape	mitochondrion	75.19	72.99
EES10690	Sorghum	mitochondrion	72.56	71.48
Zm00001d025286_P001	Maize	mitochondrion	73.31	71.43
Zm00001d016619_P001	Maize	mitochondrion	72.93	71.32
AT5G13430.1	Thale cress	mitochondrion	72.56	70.96
GSMUA_AchrUn_...	Banana	mitochondrion	73.31	70.91
CDY09798	Canola	mitochondrion	72.18	70.85
AT5G13440.1	Thale cress	mitochondrion	72.93	70.8
CDX78521	Canola	mitochondrion	71.8	70.74
TraesCS6A01G202900.1	Wheat	mitochondrion	69.92	70.45
TraesCS6D01G187400.1	Wheat	mitochondrion	71.43	70.37
TraesCS6B01G229200.1	Wheat	mitochondrion	71.43	70.37
CDX70502	Canola	mitochondrion	72.18	70.33
Bra008830.1-P	Field mustard	mitochondrion	71.8	70.22
CDY16491	Canola	mitochondrion	71.8	70.22
Os02t0520800-01	Rice	mitochondrion	71.8	70.22
KXG30298	Sorghum	mitochondrion	71.8	70.22
CDX91122	Canola	mitochondrion	71.43	70.11
CDX85651	Canola	mitochondrion	72.18	70.07
Bra006199.1-P	Field mustard	mitochondrion	72.18	70.07
CDX85650	Canola	mitochondrion	71.8	69.71
CDX78520	Canola	mitochondrion	72.18	69.57
CDX70503	Canola	mitochondrion	71.8	69.45
Bra023412.1-P	Field mustard	mitochondrion	71.43	69.34
GSMUA_Achr5P21560_001	Banana	mitochondrion	71.8	69.2
Os04t0398500-01	Rice	mitochondrion	72.18	69.06
Bra023411.1-P	Field mustard	mitochondrion	71.05	68.98
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	70.68	68.86
TraesCS2A01G288200.1	Wheat	mitochondrion	70.68	68.86
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	70.68	68.86
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	70.68	68.86
Bra006198.1-P	Field mustard	mitochondrion	70.68	67.87
HORVU6Hr1G051210.7	Barley	endoplasmic reticulum	67.29	65.09
TraesCS7B01G151800.1	Wheat	mitochondrion	65.79	64.34
CDX91123	Canola	cytosol	72.18	43.84

Protein Annotations

KEGG:00190+1.10.2.2	EntrezGene:100799135	Gene3D:2.102.10.10	MapMan:2.4.3.4	EMBL:ACUP02000745	EnsemblPlantsGene:GLYMA_02G066500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006810
GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0016679	GO:GO:0022900	GO:GO:0051537	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600
UniProt:I1JCZ8	InterPro:IPR017941	InterPro:IPR036922	EnsemblPlants:KRH70066	ProteinID:KRH70066	ProteinID:KRH70066.1
PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17
MetaCyc:PWY-3781	MetaCyc:PWY-6692	MetaCyc:PWY-7082	MetaCyc:PWY-7279	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf
InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022	SUPFAM:SSF81502	TIGRFAMs:TIGR01416
UniParc:UPI0002336F04	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5903451..5906599

Molecular Weight (calculated)

29280.0 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.192

Length

266 amino acids

Sequence
(BLAST)

001: MLRVAARRLS SSLSSSSPLR PNHAASAFLS RNDVVVDDRR SAPSSHPLLP FRGYATESLI HTKENSITPE IPPTVTAVKN PTSKIVYDDH NHERFPPGDP
101: SKRAFAYFVL TGGRFAYASV VRLLVLKFVL SMSASKDVLA LASLEVDLSS IEPGTTVTVK WRGKPVFIRR RTEDDIKLAN SVDVGSLRDP QPDADRVKDP
201: EWLIVIGVCT HLGCIPLPNA GDFGGWFCPC HGSHYDISGR IRKGPAPYNL EVPTYTFLEE NKLMIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.