Factsheet for TraesCS2A01G288200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13430.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT5G13430.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT5G13430.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G286500.1	Wheat	golgi, mitochondrion	100.0	100.0
TraesCS2B01G305000.1	Wheat	golgi, mitochondrion, unclear	99.27	99.27
HORVU2Hr1G071350.1	Barley	mitochondrion, plasma membrane	99.27	99.27
TraesCS7B01G151800.1	Wheat	mitochondrion	89.38	89.71
CDY09795	Canola	cytosol	44.32	89.63
EES10690	Sorghum	mitochondrion	87.55	88.52
TraesCS6A01G202900.1	Wheat	mitochondrion	80.59	83.33
Zm00001d025286_P001	Maize	mitochondrion	82.78	82.78
Os04t0398500-01	Rice	mitochondrion	82.78	81.3
GSMUA_Achr3P19600_001	Banana	cytosol	63.0	76.44
CDX69642	Canola	mitochondrion	67.4	75.72
Solyc11g039840.1.1	Tomato	plastid	72.89	75.09
PGSC0003DMT400041105	Potato	mitochondrion	72.89	75.09
GSMUA_AchrUn_...	Banana	mitochondrion	74.73	74.18
GSMUA_Achr5P21560_001	Banana	mitochondrion	74.36	73.55
KRH08411	Soybean	mitochondrion	69.96	72.35
AT5G13430.1	Thale cress	mitochondrion	70.7	70.96
KRH70065	Soybean	nucleus	68.86	70.94
CDX70502	Canola	mitochondrion	70.7	70.7
KRH70066	Soybean	mitochondrion	68.86	70.68
CDX85651	Canola	mitochondrion	70.7	70.44
CDX91122	Canola	mitochondrion	69.6	70.11
Bra006199.1-P	Field mustard	mitochondrion	69.96	69.71
Bra023411.1-P	Field mustard	mitochondrion	69.96	69.71
CDX78521	Canola	mitochondrion	68.86	69.63
CDX70503	Canola	mitochondrion	69.96	69.45
CDY09798	Canola	mitochondrion	68.86	69.37
VIT_14s0068g01030.t01	Wine grape	mitochondrion	69.6	69.34
CDX85650	Canola	mitochondrion	69.6	69.34
CDX78520	Canola	mitochondrion	69.96	69.2
CDY16491	Canola	mitochondrion	68.86	69.12
Bra008830.1-P	Field mustard	mitochondrion	68.86	69.12
Bra023412.1-P	Field mustard	mitochondrion	69.23	68.98
AT5G13440.1	Thale cress	mitochondrion	69.23	68.98
Bra006198.1-P	Field mustard	mitochondrion	69.23	68.23
CDX91123	Canola	cytosol	70.7	44.06

Protein Annotations

KEGG:00190+1.10.2.2	Gene3D:2.102.10.10	MapMan:2.4.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016491	GO:GO:0016679	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922
PFAM:PF00355	PFAM:PF02921	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF17
InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	InterPro:Rieske_TM	SUPFAM:SSF50022
SUPFAM:SSF81502	TIGRFAMs:TIGR01416	EnsemblPlantsGene:TraesCS2A01G288200	EnsemblPlants:TraesCS2A01G288200.1	InterPro:Ubiquinol_cyt_c_Rdtase_Fe-S-su	TIGR:cd03470
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:495220622..495222701

Molecular Weight (calculated)

29810.6 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.186

Length

273 amino acids

Sequence
(BLAST)

001: MLRVAGRRLS SSLSWRPVAT VGARGPLAGA GGPGRDDDDG SAYQRRFAIE SPFFTAARGF SSAETLVPRN QDAGLAELPA TVAALKNPNS KILYDQYNHE
101: RYPPGDPSKR AFAYFVLSGG RFVYASLLRL LVLKFVLSMS ASKDVLALAS LEVDLSSIEP GSTVTVKWRG KPVFIRRRTD DDIKLANSVD VASLRHPEQD
201: AERVKNPEWL VVIGVCTHLG CIPLPNSGDF GGWFCPCHGS HYDISGRIRK GPAPYNLEVP TYSFLEDNKM LIG

Best Arabidopsis Sequence Match ( AT5G13430.1 )
(BLAST)

001: MLRVAGRRLF SVSQRSSTAT SFVVSRDHTL SDGGGDSSSA PRSLPSADLS SYHRSLIRGF SSQVLAQGNE IGFGSEVPAT VEAVKTPNSK IVYDDHNHER
101: YPPGDPSKRA FAYFVLSGGR FVYASVLRLL VLKLIVSMSA SKDVLALASL EVDLGSIEPG TTVTVKWRGK PVFIRRRTED DIKLANSVDV GSLRDPQEDS
201: VRVKNPEWLV VVGVCTHLGC IPLPNAGDYG GWFCPCHGSH YDISGRIRKG PAPYNLEVPT YSFLEENKLL IG

Arabidopsis Description

UCR1-1Cytochrome b-c1 complex subunit Rieske-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94JS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.