Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G235100.2 | Wheat | nucleus | 94.88 | 95.62 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 90.28 | 86.73 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 80.56 | 69.69 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 51.41 | 67.0 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 38.62 | 63.71 |
| Zm00001d010048_P004 | Maize | nucleus | 51.41 | 54.77 |
| KXG21735 | Sorghum | nucleus | 47.06 | 54.76 |
| CDY36289 | Canola | nucleus | 27.11 | 36.43 |
| CDY67039 | Canola | nucleus | 27.11 | 36.3 |
| Bra034159.1-P | Field mustard | nucleus | 26.6 | 35.86 |
| CDY00987 | Canola | nucleus | 27.62 | 34.73 |
| CDY08557 | Canola | nucleus | 27.88 | 34.71 |
| Bra029889.1-P | Field mustard | nucleus | 27.88 | 34.71 |
| TraesCS1D01G244500.1 | Wheat | nucleus | 20.46 | 34.63 |
| Bra028759.1-P | Field mustard | nucleus | 26.09 | 33.44 |
| CDY52149 | Canola | nucleus | 27.11 | 32.32 |
| Bra005852.1-P | Field mustard | nucleus | 26.6 | 31.71 |
| CDY04950 | Canola | nucleus | 26.09 | 31.48 |
| AT5G05410.1 | Thale cress | nucleus | 26.6 | 31.04 |
| CDX70151 | Canola | nucleus | 26.09 | 30.91 |
| Bra009112.1-P | Field mustard | nucleus | 26.09 | 30.91 |
| CDX98843 | Canola | nucleus | 26.34 | 30.84 |
| AT3G11020.1 | Thale cress | nucleus | 24.55 | 29.09 |
| Bra001386.1-P | Field mustard | nucleus | 25.32 | 25.78 |
| CDX73896 | Canola | nucleus | 25.06 | 25.65 |
| TraesCS4D01G289200.1 | Wheat | nucleus | 18.16 | 22.26 |
| TraesCS1D01G225000.1 | Wheat | plastid | 14.32 | 21.79 |
| CDY00719 | Canola | nucleus | 6.14 | 10.13 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF16 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1D01G223600 | EnsemblPlants:TraesCS1D01G223600.2 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:311366442..311369433
Molecular Weight (calculated)
42478.5 Da
IEP (calculated)
4.816
GRAVY (calculated)
-0.590
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVDRKHAEA AAAAPFEIPA LQPGRTCGAE ESTRSHVLVK PIGSSNLPCN EYALLARQNP KGDAPPVASI LRKKRPRRSR DGPNSVSETI RRWKEVNQQL
101: EHDPQGAKRA RKPPAKGSKK GCMLGKGGPE NTQCGFRGVR QRTWGKWVAE IREPNRVSRL WLGTFPTAED AARAYDEAAR AMYGALARTN FPVHPAQAPA
201: VAVPAAIEGV VRGASASCES TTTSTNHSDV ASSLPRQAQA PEIYSQPDAL ESTESVVLES VEHYSHQDTV PDAGSSISRS TSEEDVFEPL EPISSLPDGE
301: ADGFDIEELL RLMEADPIEV ELVTGGSWNG GANTGVEMGQ QEPLYLDGLD QGMLEGMLQS DYPYPMWISE DRAMHNSAFH DAEMSEFFEG L
101: EHDPQGAKRA RKPPAKGSKK GCMLGKGGPE NTQCGFRGVR QRTWGKWVAE IREPNRVSRL WLGTFPTAED AARAYDEAAR AMYGALARTN FPVHPAQAPA
201: VAVPAAIEGV VRGASASCES TTTSTNHSDV ASSLPRQAQA PEIYSQPDAL ESTESVVLES VEHYSHQDTV PDAGSSISRS TSEEDVFEPL EPISSLPDGE
301: ADGFDIEELL RLMEADPIEV ELVTGGSWNG GANTGVEMGQ QEPLYLDGLD QGMLEGMLQS DYPYPMWISE DRAMHNSAFH DAEMSEFFEG L
001: MKTSSCSYFG VITFRKRKSR GTRDVAEILR QWREYNEQIE AESCIDGGGP KSIRKPPPKG SRKGCMKGKG GPENGICDYR GVRQRRWGKW VAEIREPDGG
101: ARLWLGTFSS SYEAALAYDE AAKAIYGQSA RLNLPEITNR SSSTAATATV SGSVTAFSDE SEVCAREDTN ASSGFGQVKL EDCSDEYVLL DSSQCIKEEL
201: KGKEEVREEH NLAVGFGIGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA
301: QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST
101: ARLWLGTFSS SYEAALAYDE AAKAIYGQSA RLNLPEITNR SSSTAATATV SGSVTAFSDE SEVCAREDTN ASSGFGQVKL EDCSDEYVLL DSSQCIKEEL
201: KGKEEVREEH NLAVGFGIGQ DSKRETLDAW LMGNGNEQEP LEFGVDETFD INELLGILND NNVSGQETMQ YQVDRHPNFS YQTQFPNSNL LGSLNPMEIA
301: QPGVDYGCPY VQPSDMENYG IDLDHRRFND LDIQDLDFGG DKDVHGST
Arabidopsis Description
DREB2CIntegrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G40340]
SUBAcon: [mitochondrion,plastid,nucleus]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.