Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04480.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G362600.1 | Wheat | peroxisome | 94.83 | 94.83 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 94.42 | 94.42 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 93.33 | 94.1 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 77.28 | 77.49 |
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 74.56 | 75.17 |
| Zm00001d018439_P003 | Maize | cytosol | 69.12 | 66.84 |
| PGSC0003DMT400049176 | Potato | cytosol | 25.31 | 61.79 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 5.99 | 57.14 |
| GSMUA_Achr10P... | Banana | peroxisome | 55.51 | 57.14 |
| Solyc04g010080.2.1 | Tomato | cytosol | 52.52 | 52.95 |
| Bra001106.1-P | Field mustard | plasma membrane | 51.7 | 52.85 |
| CDX74189 | Canola | plasma membrane | 51.7 | 52.78 |
| CDY42929 | Canola | plasma membrane | 50.75 | 52.54 |
| Bra040191.1-P | Field mustard | plasma membrane | 50.88 | 52.53 |
| CDY49334 | Canola | plasma membrane | 50.75 | 52.31 |
| AT3G04480.1 | Thale cress | plasma membrane | 51.02 | 52.23 |
| CDX92070 | Canola | plasma membrane | 51.29 | 52.14 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 52.52 | 50.99 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 50.2 | 49.8 |
| CDY20689 | Canola | extracellular | 8.16 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G378100.1 | EnsemblPlantsGene:TraesCS6A01G378100 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | InterPro:DPH6/MJ0570 |
| InterPro:Diphthami_syn_dom | InterPro:IPR014729 | InterPro:IPR035959 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf | InterPro:YjgF/YER057c/UK114 |
| PANTHER:PTHR12196 | PFAM:PF01042 | PFAM:PF01902 | SEG:seg | SUPFAM:SSF52402 | SUPFAM:SSF55298 |
| TIGR:cd01994 | TIGR:cd06155 | TIGR:cd06156 | TIGRFAMs:TIGR00290 | MapMan:17.5.2.2.6 | : |
Description
No Description!
Coordinates
chr6A:+:599047365..599051994
Molecular Weight (calculated)
79253.8 Da
IEP (calculated)
5.298
GRAVY (calculated)
0.058
Length
735 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVALVSGG KDSCFSMMRC LDYGHKVVAL ANLIPLDDAV DELDSYMYQT VGHQIVICYA KCMGLPLFRR RISGSTRDHA LKYSVTAGDE VEDMFALLSE
101: VKRRIPSIGA VSSGAIASDY QRLRVESVCS RLGLVSLAYM WRQDQTLLLE EMIRRGIVAI TVKVAAMGLK PSAHLGKELA ELKGHLLQMN ESFGINVCGE
201: GGEYETLTLD CPLFRNARIV LDDFEVILHS ADSIASVGIL HPLAFHVEPK PGSSSSIGDG AIAEENSSCL YEVNGAIAHT DAENKQTLNP TPTSDAYPDT
301: NVCISKTGRT LFSIGCWIEE PSSASQGMKA DLVKVLSRIE NRLKDGGLSW ANVVYVHLYI SSMKEFGLAN EVYVSFITEK KCHLGVPSRS TIELPLVQAG
401: LGHAYVEVLV ASDLVKRVLH VQSISCWAPS CIGPYSQATL YGEILYMAGQ LGLDPPTMKL CPGGATAQLE LALRNSEAVA NAFKSSIFSS AVHFLVYCSA
501: HLTSTEKEAV EQKLQNSYIA HLDSARSGSY PTILYVLAPD LPKGACVEIK PTLYVPTDDY DGDDDDGDIT KELETGGSKP SSSKVPSEWS AQYSGLHDSC
601: CLINAVAGKI CSALVSVTND IASKICSSTE QLHPSKEHLK AIARFCAFQL AKTLTDTGFT WDDVTMLRFY YLVKHAAAAD TMSRAFSEAF TELGGADGSL
701: RTAGAPVFNL IPVSGSGRSA SMDDVITCEL LASKA
101: VKRRIPSIGA VSSGAIASDY QRLRVESVCS RLGLVSLAYM WRQDQTLLLE EMIRRGIVAI TVKVAAMGLK PSAHLGKELA ELKGHLLQMN ESFGINVCGE
201: GGEYETLTLD CPLFRNARIV LDDFEVILHS ADSIASVGIL HPLAFHVEPK PGSSSSIGDG AIAEENSSCL YEVNGAIAHT DAENKQTLNP TPTSDAYPDT
301: NVCISKTGRT LFSIGCWIEE PSSASQGMKA DLVKVLSRIE NRLKDGGLSW ANVVYVHLYI SSMKEFGLAN EVYVSFITEK KCHLGVPSRS TIELPLVQAG
401: LGHAYVEVLV ASDLVKRVLH VQSISCWAPS CIGPYSQATL YGEILYMAGQ LGLDPPTMKL CPGGATAQLE LALRNSEAVA NAFKSSIFSS AVHFLVYCSA
501: HLTSTEKEAV EQKLQNSYIA HLDSARSGSY PTILYVLAPD LPKGACVEIK PTLYVPTDDY DGDDDDGDIT KELETGGSKP SSSKVPSEWS AQYSGLHDSC
601: CLINAVAGKI CSALVSVTND IASKICSSTE QLHPSKEHLK AIARFCAFQL AKTLTDTGFT WDDVTMLRFY YLVKHAAAAD TMSRAFSEAF TELGGADGSL
701: RTAGAPVFNL IPVSGSGRSA SMDDVITCEL LASKA
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.