CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04480.1	CDX70151	AT5G05410.1	18552202
AT3G04480.1	CDX98843	AT5G05410.1	18552202
AT3G04480.1	CDY04950	AT5G05410.1	18552202
AT3G04480.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001106.1-P	Field mustard	plasma membrane	99.86	100.0
CDX92070	Canola	plasma membrane	93.33	92.95
VIT_14s0036g00840.t01	Wine grape	cytosol	9.58	89.61
CDY42929	Canola	plasma membrane	87.5	88.73
CDY49334	Canola	plasma membrane	87.5	88.36
AT3G04480.1	Thale cress	plasma membrane	85.42	85.65
CDY20689	Canola	extracellular	18.89	83.95
PGSC0003DMT400049176	Potato	cytosol	27.08	64.78
Solyc04g010080.2.1	Tomato	cytosol	62.5	61.73
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	61.39	59.65
PGSC0003DMT400029925	Potato	plasma membrane	62.08	59.05
GSMUA_Achr10P...	Banana	peroxisome	58.33	58.82
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	54.44	53.48
TraesCS6D01G362600.1	Wheat	peroxisome	54.17	53.06
VIT_14s0036g00850.t01	Wine grape	mitochondrion	57.08	53.03
TraesCS6B01G415800.1	Wheat	peroxisome	53.47	52.81
HORVU6Hr1G088800.8	Barley	peroxisome	53.75	52.65
KXG31325	Sorghum	cytosol, nucleus, peroxisome	53.06	52.4
TraesCS6A01G378100.1	Wheat	peroxisome	52.78	51.7
Zm00001d018439_P003	Maize	cytosol	49.72	47.11

Protein Annotations

MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	EnsemblPlants:CDX74189	ProteinID:CDX74189
ProteinID:CDX74189.1	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	EnsemblPlantsGene:GSBRNA2T00111954001	InterPro:IPR014729	InterPro:IPR035959
PFAM:PF01042	PFAM:PF01902	PANTHER:PTHR12196	MetaCyc:PWY-6482	MetaCyc:PWY-7546	InterPro:Rossmann-like_a/b/a_fold
InterPro:RutC-like_sf	SUPFAM:SSF52402	SUPFAM:SSF55298	TIGRFAMs:TIGR00290	UniPathway:UPA00559	UniParc:UPI0004EDC3F7
InterPro:YjgF/YER057c/UK114	:	:	:	:	:

Description

BnaA03g28580D

Coordinates

chrLK031800:+:1709013..1712228

Molecular Weight (calculated)

80092.8 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.102

Length

720 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYVMMKC LQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIVSYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ EMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPHLLKLK ELYGSNVCGE
201: GGEYETLTLD CPLFTNARIV LDEFEVKLHS PDSIAPVGVL HPTIFHLEKK GNTDSNSVEE EPGLVFEVQG DGPNTTEATR QVDNGIVDHT RTRVNLSKTG
301: KDNTFSICCW LEDSSESSTA GLKQDLESVL TEIESQLSKH AFNWKNVLYI HLYISDMSEF AAANETYVKF ITQEKCFFGV PSRSTIELPL VQAGLGKAYV
401: EVLVANDHSK RVLHVQSISS WAPSCIGPYS QATLHKGVLH MAGQLGLDPP TMNLRKEGAV AELNQALTNS EAIAEAFRCS ITSSAILFVV FCSERTQQSE
501: RNQLHEKFVS FLDLAKSSWR VSNVMDPIFL YILVPDLPKS ALVEVKPVLY VKEDSEDDDE TRKDQLGEGD FSCWGYKPEK WHQDCLQTRV VDGKICVNVL
601: SISAEVMKKL DEPSGDEEQQ LKRVSRFCVY LLNKTLSENS FSWQDTTSLR IHFSTSLGVS VERLSDIFET AFKVLNEMSG GVIFNGLKEP IFNLVPVLGA
701: GNSSASLDNI ITCELFSLRS

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.