Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG21735 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04480.1 | KXG21735 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018439_P003 | Maize | cytosol | 83.54 | 80.13 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 78.88 | 78.44 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 76.41 | 76.41 |
| TraesCS6D01G362600.1 | Wheat | peroxisome | 76.13 | 75.51 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 75.86 | 75.24 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 75.17 | 74.56 |
| PGSC0003DMT400049176 | Potato | cytosol | 25.79 | 62.46 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 6.45 | 61.04 |
| GSMUA_Achr10P... | Banana | peroxisome | 56.24 | 57.42 |
| Solyc04g010080.2.1 | Tomato | cytosol | 53.77 | 53.77 |
| CDY49334 | Canola | plasma membrane | 52.13 | 53.3 |
| Bra001106.1-P | Field mustard | plasma membrane | 52.4 | 53.13 |
| CDX74189 | Canola | plasma membrane | 52.4 | 53.06 |
| AT3G04480.1 | Thale cress | plasma membrane | 52.13 | 52.92 |
| Bra040191.1-P | Field mustard | plasma membrane | 51.58 | 52.81 |
| CDY42929 | Canola | plasma membrane | 51.17 | 52.54 |
| CDX92070 | Canola | plasma membrane | 51.99 | 52.42 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 53.64 | 51.65 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 51.3 | 50.47 |
| CDY20689 | Canola | extracellular | 8.5 | 38.27 |
Protein Annotations
| MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | UniProt:A0A194YU04 | InterPro:DPH6/MJ0570 |
| InterPro:Diphthami_syn_dom | InterPro:IPR014729 | InterPro:IPR035959 | EnsemblPlants:KXG31325 | ProteinID:KXG31325 | ProteinID:KXG31325.1 |
| PFAM:PF01042 | PFAM:PF01902 | PANTHER:PTHR12196 | MetaCyc:PWY-6482 | MetaCyc:PWY-7546 | InterPro:Rossmann-like_a/b/a_fold |
| InterPro:RutC-like_sf | EnsemblPlantsGene:SORBI_3004G339100 | SUPFAM:SSF52402 | SUPFAM:SSF55298 | TIGRFAMs:TIGR00290 | UniParc:UPI0007F22064 |
| InterPro:YjgF/YER057c/UK114 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:67104883..67109555
Molecular Weight (calculated)
79935.1 Da
IEP (calculated)
4.829
GRAVY (calculated)
0.080
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVALVSGG KDSCFAMMRC MDYGHKVVAL ANLIPLDDSV DELDSYMYQT VGHQIVVSYA KCMGLPLFRR RIRGSTRDQG LKYSVTAGDE VEDMFALLSE
101: VKRQIPSISA VSSGAIASDY QRLRVESVCS RLGLVSLAYL WRQDQTLLLE EMIRRGIVAI IVKVAALGLK PSSHLGKELA ELKCHLLQMN ESYGINVCGE
201: GGEYETLTLD CPLFRNARII LDDSEVILHS ADSIASVGIL HPRAFHLEHK LDSYDRIEDG PVTQESSSCL YEVDEVITHT DVEEKQSPSP AVDACANIDL
301: CISKTGKNLR SIGCWIQDPS RASEGLKADL VAVLSRIENQ LKEEGLGWVN VLYVHLYISS MKEFGLANEV YVSFITEKKC YLGVPSRSTI ELPLVQAGLG
401: KAYVEVLVSN EVVKRVLHVQ SISCWAPSCI GPYSQATLYE EILYMAGQLG LDPPTMKLCP GGPRAELELA LQNTEAVANA FSCSIYSSAI HFLVYCSAQL
501: TSSEKEEVEQ TLKSSYIARL DCLKAVSSPT VLYVFAPDLP KGARVEIKPI LYVPSNDDGV VTIEMETGVP LPAVSKAWTD CSALYSELRD SCCQVHTIGG
601: RICSAVVSIT DDIASKICST AGQLYHRENL KTMARFCAFQ IAKILEDNKF SWDSITMLRF YYSVDLSMAA DALRGAFSEA FAELAEDNSS MRTDKIPFYN
701: IVPVAGSGRS ACTNDIMTCE LLASNISSA
101: VKRQIPSISA VSSGAIASDY QRLRVESVCS RLGLVSLAYL WRQDQTLLLE EMIRRGIVAI IVKVAALGLK PSSHLGKELA ELKCHLLQMN ESYGINVCGE
201: GGEYETLTLD CPLFRNARII LDDSEVILHS ADSIASVGIL HPRAFHLEHK LDSYDRIEDG PVTQESSSCL YEVDEVITHT DVEEKQSPSP AVDACANIDL
301: CISKTGKNLR SIGCWIQDPS RASEGLKADL VAVLSRIENQ LKEEGLGWVN VLYVHLYISS MKEFGLANEV YVSFITEKKC YLGVPSRSTI ELPLVQAGLG
401: KAYVEVLVSN EVVKRVLHVQ SISCWAPSCI GPYSQATLYE EILYMAGQLG LDPPTMKLCP GGPRAELELA LQNTEAVANA FSCSIYSSAI HFLVYCSAQL
501: TSSEKEEVEQ TLKSSYIARL DCLKAVSSPT VLYVFAPDLP KGARVEIKPI LYVPSNDDGV VTIEMETGVP LPAVSKAWTD CSALYSELRD SCCQVHTIGG
601: RICSAVVSIT DDIASKICST AGQLYHRENL KTMARFCAFQ IAKILEDNKF SWDSITMLRF YYSVDLSMAA DALRGAFSEA FAELAEDNSS MRTDKIPFYN
701: IVPVAGSGRS ACTNDIMTCE LLASNISSA
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.