CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049176	Potato	cytosol	27.53	67.77
Solyc04g010080.2.1	Tomato	cytosol	62.08	63.1
CDY42929	Canola	plasma membrane	60.05	62.68
AT3G04480.1	Thale cress	plasma membrane	60.32	62.26
Bra040191.1-P	Field mustard	plasma membrane	59.65	62.08
CDY49334	Canola	plasma membrane	59.51	61.85
Bra001106.1-P	Field mustard	plasma membrane	59.65	61.47
CDX74189	Canola	plasma membrane	59.65	61.39
PGSC0003DMT400029925	Potato	plasma membrane	62.21	60.9
CDX92070	Canola	plasma membrane	58.97	60.44
GSMUA_Achr10P...	Banana	peroxisome	56.41	58.54
CDY20689	Canola	extracellular	12.42	56.79
VIT_14s0036g00850.t01	Wine grape	mitochondrion	59.11	56.52
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	51.15	51.71
KXG31325	Sorghum	cytosol, nucleus, peroxisome	50.47	51.3
TraesCS6B01G415800.1	Wheat	peroxisome	49.93	50.75
TraesCS6D01G362600.1	Wheat	peroxisome	50.34	50.75
HORVU6Hr1G088800.8	Barley	peroxisome	50.2	50.61
TraesCS6A01G378100.1	Wheat	peroxisome	49.8	50.2
Zm00001d018439_P003	Maize	cytosol	46.83	45.66

Protein Annotations

EntrezGene:100807009	MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	EMBL:ACUP02012051
InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	EnsemblPlantsGene:GLYMA_19G115700	UniProt:I1N8C3	InterPro:IPR014729	InterPro:IPR035959
EnsemblPlants:KRG94883	ProteinID:KRG94883	ProteinID:KRG94883.1	PFAM:PF01042	PFAM:PF01902	PANTHER:PTHR12196
MetaCyc:PWY-6482	MetaCyc:PWY-7546	InterPro:Rossmann-like_a/b/a_fold	InterPro:RutC-like_sf	SUPFAM:SSF52402	SUPFAM:SSF55298
TIGRFAMs:TIGR00290	UniParc:UPI00023DDADD	InterPro:YjgF/YER057c/UK114	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:37087585..37095991

Molecular Weight (calculated)

83077.4 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.039

Length

741 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYAMMKA IHYGHEIVAL ANLMPLDDSV DELDSYMYQT VGHQIIVRYA ECMGLPLFRR RIQGSSRHQE LGYKETQGDE VEDLCILLRE
101: VKRQIPSVSA VSSGAIASDY QRLRVESVCS RLGLVSLAYL WKQDQSLLLQ EMITNGIVAV TVKVAAMGLD PAKHLGKELA FLNAYLHKLK ELYGINVCGE
201: GGEYETLTLD CPLFSNARIV LDEYQVVMHS SDSIAPVGIL HPLAFHLENK ADVQYLKSQD KIHESFTQKL GSVFEVQDSV EGCEATCKPV DYRADPINDI
301: EHKFNISRTN NKGTFSICFW LQDSCNGLQE DLKIVLGKIE SQLLGLGFGW ENVLYIHLYI DDMNNFSEAN ETYVKFITQE KCPFGVPSRS TVEMPLIEMG
401: FSRAYIEVLV ANNKDKKVLH VQSISSWAPS CIGPYSQATL HEGILHMAGQ LGLDPPTMNL CKGGPGVELE QALKNSEAVA KCFNCSITTS AIAFVIYCSK
501: HISLLERLDI QEKQETILRQ MKISHLQERT TYKALDPLFL YVLVPDLPKR AYVEVKPILY VEDDTDVAFE VVTERFCLET PPSYWGFKPE NWHDSCTQKC
601: VISGKTCAII LSITSELAAK ICFDSLPAEY VNNGQHSLPK AHMEKISKFC IYLLDKVMTD DDFAWEDIMS LRFYIPVSLQ MSVQLLQPMF CNALFELSEM
701: SQKKLKTGEE PIFNIVPVIG SGRSASSMDD VVTCELMAQK S

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.