Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- extracellular 2
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 9.75 | 90.91 |
| CDY49334 | Canola | plasma membrane | 84.96 | 85.55 |
| Bra001106.1-P | Field mustard | plasma membrane | 85.65 | 85.54 |
| CDX74189 | Canola | plasma membrane | 85.65 | 85.42 |
| CDX92070 | Canola | plasma membrane | 85.79 | 85.2 |
| Bra040191.1-P | Field mustard | plasma membrane | 84.4 | 85.11 |
| CDY42929 | Canola | plasma membrane | 83.98 | 84.93 |
| CDY20689 | Canola | extracellular | 18.11 | 80.25 |
| PGSC0003DMT400049176 | Potato | cytosol | 27.16 | 64.78 |
| Solyc04g010080.2.1 | Tomato | cytosol | 62.67 | 61.73 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 62.26 | 60.32 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 62.12 | 58.92 |
| GSMUA_Achr10P... | Banana | peroxisome | 57.24 | 57.56 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 54.18 | 53.07 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 53.48 | 52.67 |
| TraesCS6D01G362600.1 | Wheat | peroxisome | 53.62 | 52.38 |
| VIT_14s0036g00850.t01 | Wine grape | mitochondrion | 56.41 | 52.26 |
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 52.92 | 52.13 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 53.2 | 51.97 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 52.23 | 51.02 |
| Zm00001d018439_P003 | Maize | cytosol | 49.86 | 47.11 |
Protein Annotations
| MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | EntrezGene:819604 | UniProt:A0A178V8Z9 |
| ProteinID:AEE74087.1 | ArrayExpress:AT3G04480 | EnsemblPlantsGene:AT3G04480 | RefSeq:AT3G04480 | TAIR:AT3G04480 | RefSeq:AT3G04480-TAIR-G |
| EnsemblPlants:AT3G04480.1 | TAIR:AT3G04480.1 | Unigene:At.18853 | InterPro:DPH6/MJ0570 | InterPro:Diphthami_syn_dom | UniProt:F4J3Q1 |
| InterPro:IPR014729 | InterPro:IPR035959 | RefSeq:NP_187098.2 | ProteinID:OAP01483.1 | PFAM:PF01042 | PFAM:PF01902 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR12196 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf | SUPFAM:SSF52402 | SUPFAM:SSF55298 | TIGRFAMs:TIGR00290 |
| UniParc:UPI00015057D3 | InterPro:YjgF/YER057c/UK114 | SEG:seg | : | : | : |
Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
Coordinates
chr3:-:1193540..1197421
Molecular Weight (calculated)
79903.5 Da
IEP (calculated)
4.933
GRAVY (calculated)
-0.108
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.