Factsheet for VIT_14s0036g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20689	Canola	extracellular	68.83	32.72
CDY42929	Canola	plasma membrane	90.91	9.86
Bra040191.1-P	Field mustard	plasma membrane	90.91	9.83
CDY49334	Canola	plasma membrane	90.91	9.82
AT3G04480.1	Thale cress	plasma membrane	90.91	9.75
CDX92070	Canola	plasma membrane	90.91	9.68
GSMUA_Achr10P...	Banana	peroxisome	89.61	9.66
Bra001106.1-P	Field mustard	plasma membrane	89.61	9.6
CDX74189	Canola	plasma membrane	89.61	9.58
KXG31325	Sorghum	cytosol, nucleus, peroxisome	61.04	6.45
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	59.74	6.28
TraesCS6B01G415800.1	Wheat	peroxisome	58.44	6.17
HORVU6Hr1G088800.8	Barley	peroxisome	58.44	6.12
TraesCS6D01G362600.1	Wheat	peroxisome	58.44	6.12
TraesCS6A01G378100.1	Wheat	peroxisome	57.14	5.99
Zm00001d018439_P003	Maize	cytosol	37.66	3.82
VIT_14s0036g00850.t01	Wine grape	mitochondrion	25.97	2.58

Protein Annotations

Gene3D:3.40.50.620	MapMan:35.2	ProteinID:CCB47642	ProteinID:CCB47642.1	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom
UniProt:F6H603	EMBL:FN595241	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0006139
GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074
InterPro:IPR014729	PFAM:PF01902	PANTHER:PTHR12196	InterPro:Rossmann-like_a/b/a_fold	SUPFAM:SSF52402	UniParc:UPI0002108CFA
ArrayExpress:VIT_14s0036g00840	EnsemblPlantsGene:VIT_14s0036g00840	EnsemblPlants:VIT_14s0036g00840.t01	:	:	:

Description

No Description!

Coordinates

chr14:+:11059343..11066571

Molecular Weight (calculated)

8530.5 Da

IEP (calculated)

8.049

GRAVY (calculated)

0.116

Length

77 amino acids

Sequence
(BLAST)

1: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPADDSV DELDSYMYQT VGHQIVVSYA KCMGVPLFRR RIQGSTR

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.