Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010048_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04480.1 | Zm00001d010048_P004 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 80.13 | 83.54 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 69.47 | 72.03 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 68.29 | 71.19 |
| TraesCS6D01G362600.1 | Wheat | peroxisome | 67.63 | 69.93 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 67.5 | 69.8 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 66.84 | 69.12 |
| PGSC0003DMT400049176 | Potato | cytosol | 24.47 | 61.79 |
| GSMUA_Achr10P... | Banana | peroxisome | 48.68 | 51.82 |
| AT3G04480.1 | Thale cress | plasma membrane | 47.11 | 49.86 |
| Bra001106.1-P | Field mustard | plasma membrane | 47.11 | 49.79 |
| CDX74189 | Canola | plasma membrane | 47.11 | 49.72 |
| CDY49334 | Canola | plasma membrane | 46.32 | 49.37 |
| Bra040191.1-P | Field mustard | plasma membrane | 46.18 | 49.3 |
| CDX92070 | Canola | plasma membrane | 46.71 | 49.1 |
| Solyc04g010080.2.1 | Tomato | cytosol | 46.97 | 48.97 |
| CDY42929 | Canola | plasma membrane | 45.66 | 48.87 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 47.5 | 47.69 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 45.66 | 46.83 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 3.82 | 37.66 |
| CDY20689 | Canola | extracellular | 7.37 | 34.57 |
Protein Annotations
| EntrezGene:103627881 | MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | UniProt:A0A1D6HNY1 |
| ProteinID:AQK75990.1 | InterPro:DPH6/MJ0570 | InterPro:Diphthami_syn_dom | InterPro:IPR014729 | InterPro:IPR035959 | PFAM:PF01042 |
| PFAM:PF01902 | PANTHER:PTHR12196 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf | SUPFAM:SSF52402 | SUPFAM:SSF55298 |
| TIGRFAMs:TIGR00290 | UniParc:UPI00084379C2 | InterPro:YjgF/YER057c/UK114 | EnsemblPlantsGene:Zm00001d018439 | EnsemblPlants:Zm00001d018439_P003 | EnsemblPlants:Zm00001d018439_T003 |
| SEG:seg | : | : | : | : | : |
Description
endoribonucleases
Coordinates
chr5:-:220890838..220895860
Molecular Weight (calculated)
82379.0 Da
IEP (calculated)
4.773
GRAVY (calculated)
0.158
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVALVSGG KDSCFAMMRC MDYGHKVVAL ANLIPLDDTV DELDSYMYQT VCPVSYLPSL APGARSVIRP SVLAGIWMTL ADAPACCGRG RGGFRDQGLR
101: YSVTAGDEVE DMFALLSEVK RRIPSISAVS SGAIASDYQR LRVESVCSRL GLVSLAYLWK QDQTLLLEEM IRRGIVAIIV KVAALGLKPS SHLGKELAEL
201: KCHLLQMNEY VSHRPAPTIC LLISLFIFLC PIRNYGINVC GEGGEYETLT LDCPLFRNAR IILDDSEVIL HSADSIASVG ILHPRAFHLE QKPDSSDRIG
301: DGSAVQESSS CVYEVDEVTT HDDVGEKQAL SPAVDAYTNV DLCLKADLIA VLSRIENQLK EEGLGWVNVL YVHLYISSMK EFGLANEVYV SFITEKKCYL
401: GVPSRSTIEL PLVQAGLGKA YVEVLVSNEV VKRVLHVQSI SCWAPSCIGP YSQATLYEDI LYMAGQLGLD PPTMKLCLGG PRAELELALQ NSEAVANAFS
501: CSIYISAIHF LVYCSAQLTS SEKEEIEQTL KSSYITRLDR SKGGSYPTVL YVFASDLPKG ARVEVKPILY VPSTDDWVAA EETETGVPLP APSKTWTDCT
601: APYSALRDSC CQVHTTGGRI CSAVVSITDD IASKICSAAG QLHHGEENLK IMARFCAFQI AKTLADNRFS WDSVTMLRLY YSVDLAVAAD AVSGAFSEAL
701: AELAQDNPSM RTDVPFYNVV PVAGAGRSAC ANDIMACELL ASNVSSAKSI PAEPFAVTPA
101: YSVTAGDEVE DMFALLSEVK RRIPSISAVS SGAIASDYQR LRVESVCSRL GLVSLAYLWK QDQTLLLEEM IRRGIVAIIV KVAALGLKPS SHLGKELAEL
201: KCHLLQMNEY VSHRPAPTIC LLISLFIFLC PIRNYGINVC GEGGEYETLT LDCPLFRNAR IILDDSEVIL HSADSIASVG ILHPRAFHLE QKPDSSDRIG
301: DGSAVQESSS CVYEVDEVTT HDDVGEKQAL SPAVDAYTNV DLCLKADLIA VLSRIENQLK EEGLGWVNVL YVHLYISSMK EFGLANEVYV SFITEKKCYL
401: GVPSRSTIEL PLVQAGLGKA YVEVLVSNEV VKRVLHVQSI SCWAPSCIGP YSQATLYEDI LYMAGQLGLD PPTMKLCLGG PRAELELALQ NSEAVANAFS
501: CSIYISAIHF LVYCSAQLTS SEKEEIEQTL KSSYITRLDR SKGGSYPTVL YVFASDLPKG ARVEVKPILY VPSTDDWVAA EETETGVPLP APSKTWTDCT
601: APYSALRDSC CQVHTTGGRI CSAVVSITDD IASKICSAAG QLHHGEENLK IMARFCAFQI AKTLADNRFS WDSVTMLRLY YSVDLAVAAD AVSGAFSEAL
701: AELAQDNPSM RTDVPFYNVV PVAGAGRSAC ANDIMACELL ASNVSSAKSI PAEPFAVTPA
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.