CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04480.1	CDX70151	AT5G05410.1	18552202
AT3G04480.1	CDX98843	AT5G05410.1	18552202
AT3G04480.1	CDY04950	AT5G05410.1	18552202
AT3G04480.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040191.1-P	Field mustard	plasma membrane	95.77	95.51
CDY49334	Canola	plasma membrane	91.69	91.3
VIT_14s0036g00840.t01	Wine grape	cytosol	9.86	90.91
CDX74189	Canola	plasma membrane	88.73	87.5
CDY20689	Canola	extracellular	19.86	87.04
CDX92070	Canola	plasma membrane	88.17	86.58
AT3G04480.1	Thale cress	plasma membrane	84.93	83.98
PGSC0003DMT400049176	Potato	cytosol	27.18	64.12
Solyc04g010080.2.1	Tomato	cytosol	63.1	61.45
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	62.68	60.05
PGSC0003DMT400029925	Potato	plasma membrane	62.96	59.05
GSMUA_Achr10P...	Banana	peroxisome	58.17	57.84
VIT_14s0036g00850.t01	Wine grape	mitochondrion	57.89	53.03
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	54.08	52.39
TraesCS6D01G362600.1	Wheat	peroxisome	53.66	51.84
TraesCS6B01G415800.1	Wheat	peroxisome	52.96	51.58
HORVU6Hr1G088800.8	Barley	peroxisome	53.1	51.29
KXG31325	Sorghum	cytosol, nucleus, peroxisome	52.54	51.17
TraesCS6A01G378100.1	Wheat	peroxisome	52.54	50.75
Zm00001d018439_P003	Maize	cytosol	48.87	45.66

Protein Annotations

MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	UniProt:A0A078I030	EnsemblPlants:CDY42929
ProteinID:CDY42929	ProteinID:CDY42929.1	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	EnsemblPlantsGene:GSBRNA2T00075667001	InterPro:IPR014729
InterPro:IPR035959	PFAM:PF01042	PFAM:PF01902	PANTHER:PTHR12196	MetaCyc:PWY-6482	MetaCyc:PWY-7546
InterPro:Rossmann-like_a/b/a_fold	InterPro:RutC-like_sf	SUPFAM:SSF52402	SUPFAM:SSF55298	TIGRFAMs:TIGR00290	UniPathway:UPA00559
UniParc:UPI0004EE4D00	InterPro:YjgF/YER057c/UK114	:	:	:	:

Description

BnaC05g47220DBnaC05g47220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I030]

Coordinates

chrLK032538:-:234940..238407

Molecular Weight (calculated)

79419.0 Da

IEP (calculated)

5.144

GRAVY (calculated)

-0.162

Length

710 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYVMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIVSYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDLFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ EMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK ELYGSNVCGE
201: GGEYETLTLD CPLFTNARIV LDEFQVVLHS PDSIAPVGVL HPTTFHLEKK DSNSLEKKEP GLVFEVQGDG PNTPESTRQP DNGTVEHTRN RVSLSKTGKE
301: NTFSICCWLE DSSQSSTGLR EDLETALKET ESQLLKQGFN WQNVLYIHLY ISDMSEFAAA NETYVKFITH EKCPFGVPSR STIELPLVQA GLGKAYVEVL
401: VANDQSKRVL HVQSISSWAP SCIGPYSQAT LHKGVLHMAG QLGLDPPTMN LRNEGAVAEL NQALTNSEAI AEAFRCSISS SALLFVVFCS ARTEESERSQ
501: LHEKFLSFLD LAKSSRRVLD PIFLYILVPD LPKRALVEVK PVLYVQEDSE TDDETRQDQF GEGDYGCWGY KPEEWHQDCV QKRVVDGKIC VTILSISTEV
601: MKKLHEPKEE QQLERVTRFC VYLLNKTLYE NSFSWNDTTS LRIHFSTSLG VSVKRLFNVF ETAFKELNEM SPEGRVAKEP IFNLVPVLGA GNSSASLDNI
701: ITCELFSLRS

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.