Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005852.1-P | Field mustard | nucleus | 97.56 | 97.56 |
| CDY04950 | Canola | nucleus | 76.52 | 77.47 |
| AT5G05410.1 | Thale cress | nucleus | 70.43 | 68.96 |
| CDX70151 | Canola | nucleus | 67.07 | 66.67 |
| CDX98843 | Canola | nucleus | 67.07 | 65.87 |
| CDY36289 | Canola | nucleus | 49.39 | 55.67 |
| CDY67039 | Canola | nucleus | 48.17 | 54.11 |
| CDY00987 | Canola | nucleus | 49.39 | 52.09 |
| CDY08557 | Canola | nucleus | 47.56 | 49.68 |
| CDX73896 | Canola | nucleus | 53.05 | 45.55 |
| CDY33815 | Canola | nucleus | 15.85 | 45.22 |
| CDX93190 | Canola | nucleus | 24.09 | 37.09 |
| CDY71905 | Canola | nucleus | 24.39 | 32.79 |
| CDY52924 | Canola | nucleus | 33.23 | 32.44 |
| CDY39036 | Canola | nucleus | 19.51 | 32.32 |
| CDY70626 | Canola | nucleus | 19.82 | 31.86 |
| CDX68128 | Canola | nucleus | 19.82 | 31.86 |
| CDY20377 | Canola | nucleus | 19.21 | 31.82 |
| CDY64211 | Canola | nucleus, plastid | 19.82 | 31.55 |
| CDY47519 | Canola | nucleus | 19.82 | 31.55 |
| KXG21735 | Sorghum | nucleus | 32.32 | 31.55 |
| CDY54455 | Canola | nucleus | 23.48 | 31.17 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 27.74 | 30.33 |
| CDY00719 | Canola | nucleus | 20.73 | 28.69 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 20.43 | 28.27 |
| Zm00001d010048_P004 | Maize | nucleus | 31.4 | 28.07 |
| CDY06088 | Canola | nucleus | 22.87 | 27.78 |
| CDY61527 | Canola | nucleus | 24.39 | 27.21 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 32.32 | 27.11 |
| CDX72012 | Canola | nucleus | 22.56 | 27.11 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 32.01 | 27.06 |
| CDX70820 | Canola | nucleus | 22.26 | 26.07 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.01 | 25.8 |
| CDX88955 | Canola | nucleus | 20.43 | 25.77 |
| CDY52095 | Canola | nucleus | 20.12 | 24.81 |
| CDY58117 | Canola | nucleus | 21.65 | 24.57 |
| CDY02629 | Canola | nucleus | 21.34 | 24.31 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 32.93 | 23.89 |
| CDX92610 | Canola | nucleus | 21.34 | 22.88 |
| CDY25420 | Canola | nucleus | 21.65 | 21.65 |
| CDY54991 | Canola | nucleus | 18.6 | 18.1 |
| CDY52427 | Canola | nucleus | 17.68 | 17.96 |
| CDY07614 | Canola | nucleus | 17.07 | 16.67 |
| CDY33814 | Canola | nucleus | 2.74 | 10.34 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078IRS2 | UniProt:A0A078IRS2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY52149 | ProteinID:CDY52149 | ProteinID:CDY52149.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00004975001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EDBC97 | SEG:seg | : | : | : | : |
Description
BnaA03g55280DBnaA03g55280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRS2]
Coordinates
chrLK033059:+:82684..83670
Molecular Weight (calculated)
36890.8 Da
IEP (calculated)
4.933
GRAVY (calculated)
-0.824
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYFHSGDI NKTQLDTSRK RKSRSRRDGT TVAERLQIWK EYNENVEEAS TKKRKVPAKG SKKGCMKGKG GPENGQCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AEEAACAYDE AARVMYGPMA RLNFPRSPVS DVTSSSSHSE VCTAPGLVHV KTEDADYESN SFVEADAKNG AYTHEEKVKK DVKVDAGSDW
201: LSEFEQKYWS EVLEEKEKQK KQVETCQKQP ASLSVSDYGW PEDLDQSHWE MFDVDELLGD LTGDMFTGLD QSQCLAGSVG GGLSESEKRQ IGLYPLQSLD
301: SSYGLPPLQL DAQDDNEFVD LRFLDLER
101: SRLWLGTFPT AEEAACAYDE AARVMYGPMA RLNFPRSPVS DVTSSSSHSE VCTAPGLVHV KTEDADYESN SFVEADAKNG AYTHEEKVKK DVKVDAGSDW
201: LSEFEQKYWS EVLEEKEKQK KQVETCQKQP ASLSVSDYGW PEDLDQSHWE MFDVDELLGD LTGDMFTGLD QSQCLAGSVG GGLSESEKRQ IGLYPLQSLD
301: SSYGLPPLQL DAQDDNEFVD LRFLDLER
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.