Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76272 | Canola | cytosol | 13.11 | 94.59 |
| CDY29373 | Canola | mitochondrion, nucleus | 91.39 | 89.71 |
| CDY17987 | Canola | plastid | 41.95 | 76.71 |
| CDY43413 | Canola | nucleus | 74.91 | 71.68 |
| AT1G20100.1 | Thale cress | nucleus | 69.66 | 65.26 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 9.74 | 63.41 |
| CDX76271 | Canola | extracellular | 35.96 | 58.18 |
| CDX96256 | Canola | extracellular, plastid | 36.7 | 52.41 |
| CDX73209 | Canola | nucleus | 44.94 | 43.17 |
| CDX87654 | Canola | nucleus | 44.94 | 42.7 |
Protein Annotations
| EnsemblPlants:CDY44203 | EnsemblPlantsGene:GSBRNA2T00079692001 | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:CDY44203 | ProteinID:CDY44203.1 |
| SEG:seg | UniParc:UPI0004EF4661 | UniProt:A0A078I4X1 | MapMan:35.2 | : | : |
Description
BnaC05g15600DBnaC05g15600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4X1]
Coordinates
chrLK032582:-:160126..161776
Molecular Weight (calculated)
30234.4 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.885
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYFTSPPP VYARNWANGQ NLVESTKIER QIVTSKKVHP KEKKERKKDK KQKNEKTIEH VYLPTKQVSD ESEQLEKSCL TEEHEKYLSD GSQSSKKRRR
101: DASPSVESNI KATPVTGNPL RIRFVFKKPK EAEFVVPQED LVCSTSGTEI SSSVSGHDEN LLPASLESVE TAILSESKKK KKHKTSKESR YSSLFDEPVL
201: PCLSIEEDDG NSDDWLLSGR RQENSSTKST MDEDMVMNLQ KSGESCFPSS QFLSEVGIFS LPYTVLF
101: DASPSVESNI KATPVTGNPL RIRFVFKKPK EAEFVVPQED LVCSTSGTEI SSSVSGHDEN LLPASLESVE TAILSESKKK KKHKTSKESR YSSLFDEPVL
201: PCLSIEEDDG NSDDWLLSGR RQENSSTKST MDEDMVMNLQ KSGESCFPSS QFLSEVGIFS LPYTVLF
001: MSRYFTSPPP VYARNWANGQ NLVEWTKIER PIVDSKKLHR KEKKEKKKEK KLKKEKKSLE QKYSTTKTVS YESEQLEKSC LTEEFEQPQV GYLSDGSQNS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
Arabidopsis Description
DNA ligase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNT6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.