Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76272 | Canola | cytosol | 24.66 | 97.3 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 18.49 | 65.85 |
| CDY44203 | Canola | nucleus | 76.71 | 41.95 |
| CDY29373 | Canola | mitochondrion, nucleus | 75.34 | 40.44 |
| CDY43413 | Canola | nucleus | 61.64 | 32.26 |
| AT1G20100.1 | Thale cress | nucleus | 55.48 | 28.42 |
| CDX76271 | Canola | extracellular | 30.82 | 27.27 |
| CDX96256 | Canola | extracellular, plastid | 32.19 | 25.13 |
| CDX87654 | Canola | nucleus | 42.47 | 22.06 |
| CDX73209 | Canola | nucleus | 41.1 | 21.58 |
Protein Annotations
| EnsemblPlants:CDY17987 | EnsemblPlantsGene:GSBRNA2T00002366001 | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:CDY17987 | ProteinID:CDY17987.1 |
| SEG:seg | UniParc:UPI0004EEE6C8 | UniProt:A0A078FYW0 | MapMan:35.2 | : | : |
Description
BnaC03g30590DBnaC03g30590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYW0]
Coordinates
chrLK032080:+:361891..362874
Molecular Weight (calculated)
16645.8 Da
IEP (calculated)
8.120
GRAVY (calculated)
-0.639
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVPCNCFN QGSLLFRLIC LISRHRERSD ECEPLEKSCL TEEHEKYLSD GSQSSKKRIR DASPSTALLS ESKKKKKHKT SKESRYSSLN SDDWLLGTRW
101: QENVSTKSTM NEDMVMNLQK PGESCFPSSQ LLSEVGIFSL PYTVLF
101: QENVSTKSTM NEDMVMNLQK PGESCFPSSQ LLSEVGIFSL PYTVLF
001: MERQIMASSK KVQREENTKE EYLPNKQVSD ESEQLEKSCL TEEEDACLSD ASHSSKKTIR EDAICESKNR KKYKPSNESG FNTLFDDDWL FGNNQQKNVV
101: TTNKAAIKND AEMIMKLLQR SCGDSLFPS
101: TTNKAAIKND AEMIMKLLQR SCGDSLFPS
Arabidopsis Description
At1g76230 [Source:UniProtKB/TrEMBL;Acc:Q9SGR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.