Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76271 | Canola | extracellular | 63.1 | 71.52 |
| CDY44203 | Canola | nucleus | 52.41 | 36.7 |
| CDY29373 | Canola | mitochondrion, nucleus | 52.94 | 36.4 |
| CDY17987 | Canola | plastid | 25.13 | 32.19 |
| CDY43413 | Canola | nucleus | 43.85 | 29.39 |
| AT1G20100.1 | Thale cress | nucleus | 42.25 | 27.72 |
| CDX87654 | Canola | nucleus | 29.41 | 19.57 |
| CDX73209 | Canola | nucleus | 28.88 | 19.42 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 1.07 | 4.88 |
| CDX76272 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX96256 | EnsemblPlantsGene:GSBRNA2T00102385001 | ProteinID:CDX96256 | ProteinID:CDX96256.1 | SEG:seg | UniParc:UPI0004EF3D27 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC02g13950D
Coordinates
chrLK031893:+:1256350..1259860
Molecular Weight (calculated)
20675.6 Da
IEP (calculated)
6.508
GRAVY (calculated)
-0.240
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MALIPCNCLF NWFLLDEDLS LDLSILGRSE SWISLRSISP WISLRSISLV GLSAGRSNTQ MGAQIVTSCV EPLEKICFTE EHEKYLSDGS QSSKKRIRDA
101: FPSVESNIKA TPVTGNPLRI CFVFKKPRES EVVVPQVPQE DRVCSTSGTE ISSSVSGHDE NLLPASLDSD KTTVLSESKK RKNIRQA
101: FPSVESNIKA TPVTGNPLRI CFVFKKPRES EVVVPQVPQE DRVCSTSGTE ISSSVSGHDE NLLPASLDSD KTTVLSESKK RKNIRQA
001: MSRYFTSPPP VYARNWANGQ NLVEWTKIER PIVDSKKLHR KEKKEKKKEK KLKKEKKSLE QKYSTTKTVS YESEQLEKSC LTEEFEQPQV GYLSDGSQNS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKMIAAAM TGFLEQVGKK
201: MFLLPSLLIR LMKTRS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKMIAAAM TGFLEQVGKK
201: MFLLPSLLIR LMKTRS
Arabidopsis Description
DNA ligase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNT6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.