Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96256 | Canola | extracellular, plastid | 71.52 | 63.1 |
| CDY44203 | Canola | nucleus | 58.18 | 35.96 |
| CDY29373 | Canola | mitochondrion, nucleus | 57.58 | 34.93 |
| CDY17987 | Canola | plastid | 27.27 | 30.82 |
| CDY43413 | Canola | nucleus | 46.67 | 27.6 |
| AT1G20100.1 | Thale cress | nucleus | 44.24 | 25.61 |
| CDX73209 | Canola | nucleus | 33.33 | 19.78 |
| CDX87654 | Canola | nucleus | 32.73 | 19.22 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 0.61 | 2.44 |
| CDX76272 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX76271 | EnsemblPlantsGene:GSBRNA2T00126631001 | ProteinID:CDX76271 | ProteinID:CDX76271.1 | SEG:seg | UniParc:UPI0004EE9DF2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA08g11290D
Coordinates
chrLK031807:+:69808..70535
Molecular Weight (calculated)
18358.5 Da
IEP (calculated)
5.726
GRAVY (calculated)
-0.433
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVPCNCLF NWFPLDEDLS WVCRYLEDQS HPSTLSLSPW TSLRSISSVT LSTIFSTNLT EEHEKYLSDG SQSSKKRIRD ASPSVESNIK ATSVTGNLLR
101: IRFVFKKPRE AEVVVPQVPQ EDRVCSTSGT EISSSASGHD ENLLPASLDS DKTAVFSESK KKKET
101: IRFVFKKPRE AEVVVPQVPQ EDRVCSTSGT EISSSASGHD ENLLPASLDS DKTAVFSESK KKKET
001: MSRYFTSPPP VYARNWANGQ NLVEWTKIER PIVDSKKLHR KEKKEKKKEK KLKKEKKSLE QKYSTTKTVS YESEQLEKSC LTEEFEQPQV GYLSDGSQNS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
Arabidopsis Description
DNA ligase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNT6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.