Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 2
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76272 | Canola | cytosol | 63.41 | 70.27 |
| CDY17987 | Canola | plastid | 65.85 | 18.49 |
| CDY44203 | Canola | nucleus | 63.41 | 9.74 |
| CDY29373 | Canola | mitochondrion, nucleus | 58.54 | 8.82 |
| CDY43413 | Canola | nucleus | 43.9 | 6.45 |
| AT1G20100.1 | Thale cress | nucleus | 34.15 | 4.91 |
| CDX87654 | Canola | nucleus | 26.83 | 3.91 |
| CDX73209 | Canola | nucleus | 24.39 | 3.6 |
| CDX96256 | Canola | extracellular, plastid | 4.88 | 1.07 |
| CDX76271 | Canola | extracellular | 2.44 | 0.61 |
Protein Annotations
| EnsemblPlants:CDX96257 | EnsemblPlantsGene:GSBRNA2T00102386001 | ProteinID:CDX96257 | ProteinID:CDX96257.1 | UniParc:UPI0004EE2B00 | MapMan:35.2 |
Description
BnaC02g13940D
Coordinates
chrLK031893:+:1259936..1260061
Molecular Weight (calculated)
4428.5 Da
IEP (calculated)
5.491
GRAVY (calculated)
0.620
Length
41 amino acids
Sequence
(BLAST)
(BLAST)
1: MTGFLVMNLQ KPGESCFPSS QFLSEVGIFF IAIHSPVLGP T
001: MSRVLTCPPL VFARNHVGVQ NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G75860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.