Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44203 | Canola | nucleus | 65.26 | 69.66 |
| Bra025792.1-P | Field mustard | mitochondrion, nucleus | 63.16 | 66.18 |
| CDY29373 | Canola | mitochondrion, nucleus | 63.16 | 66.18 |
| CDY43413 | Canola | nucleus | 64.21 | 65.59 |
| CDY17987 | Canola | plastid | 28.42 | 55.48 |
| CDX76272 | Canola | cytosol | 7.02 | 54.05 |
| CDX76271 | Canola | extracellular | 25.61 | 44.24 |
| CDX96256 | Canola | extracellular, plastid | 27.72 | 42.25 |
| AT1G75860.2 | Thale cress | endoplasmic reticulum, plastid, vacuole | 52.98 | 40.05 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 4.91 | 34.15 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838599 | ProteinID:AAF79902.1 | ProteinID:AEE29935.1 | EMBL:AF332437 | ArrayExpress:AT1G20100 |
| EnsemblPlantsGene:AT1G20100 | RefSeq:AT1G20100 | TAIR:AT1G20100 | RefSeq:AT1G20100-TAIR-G | EnsemblPlants:AT1G20100.1 | TAIR:AT1G20100.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0016874 | RefSeq:NP_564102.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 |
| UniProt:Q9LNT6 | UniParc:UPI00000A38F8 | SEG:seg | : | : | : |
Description
DNA ligase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNT6]
Coordinates
chr1:-:6969025..6971036
Molecular Weight (calculated)
32172.0 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.862
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYFTSPPP VYARNWANGQ NLVEWTKIER PIVDSKKLHR KEKKEKKKEK KLKKEKKSLE QKYSTTKTVS YESEQLEKSC LTEEFEQPQV GYLSDGSQNS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.