Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 3
- golgi 3
- plastid 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73209 | Canola | nucleus | 41.38 | 56.12 |
| CDX87654 | Canola | nucleus | 41.64 | 55.87 |
| Bra015805.1-P | Field mustard | nucleus | 41.11 | 53.45 |
| AT1G20100.1 | Thale cress | nucleus | 40.05 | 52.98 |
Protein Annotations
| ArrayExpress:AT1G75860 | EnsemblPlants:AT1G75860.2 | EnsemblPlantsGene:AT1G75860 | EntrezGene:843919 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016874 | ncoils:Coil | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:ANM60618.1 | RefSeq:AT1G75860 |
| RefSeq:AT1G75860-TAIR-G | RefSeq:NP_001322891.1 | SEG:seg | TAIR:AT1G75860 | UniParc:UPI00084942D8 | UniProt:A0A1P8AVE0 |
| MapMan:35.2 | : | : | : | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G75860]
Coordinates
chr1:-:28484130..28486077
Molecular Weight (calculated)
42917.5 Da
IEP (calculated)
10.056
GRAVY (calculated)
-0.581
Length
377 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTLHFFFY SPHALSYLLP LTVCSRSRFF RVYLRIWVSE IELTGLSRLF LFRLLESEAN LGLIGLLESR PKSFDWIREN MSRVLTCPPL VFARNHVGVQ
101: NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE EPQKHLGYLS DGSQNSKKRI
201: RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI AAIDETKKRK KHRSSKEDQY
301: NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
101: NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE EPQKHLGYLS DGSQNSKKRI
201: RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI AAIDETKKRK KHRSSKEDQY
301: NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.