Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87654 | Canola | nucleus | 84.83 | 87.54 |
| Bra025792.1-P | Field mustard | mitochondrion, nucleus | 38.62 | 41.18 |
| AT1G75860.2 | Thale cress | endoplasmic reticulum, plastid, vacuole | 53.45 | 41.11 |
Protein Annotations
Description
AT1G20100 (E=6e-044) | unknown protein
Coordinates
chrA07:-:20771995..20773508
Molecular Weight (calculated)
31922.6 Da
IEP (calculated)
9.788
GRAVY (calculated)
-0.830
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSILIARN QASGQNLVDS TKIARIVNDS KTALPKDKKE RRKHKEKREK KSHKHSSKKS SKSPGVSEKS GVTEELDGPQ NHLGYLSDGS QNSNKRKRDC
101: SPPAVESVVK AVSVAGKPLR IRLTFKKPKV ESPPLPREDV VSCSISGAES LNQAPQASAV CSTVCEPELI VPSTSETKKI CEPEVNVPST SEAAVAGEAN
201: KRKKHKPTKE DRYNALFDDW TPISTIAMEV DSSSKDDDDW LFGSRTKERR NCKAANKIDE DVRTSSDSSW PKAQFLSQVG IYSLPYTVPF
101: SPPAVESVVK AVSVAGKPLR IRLTFKKPKV ESPPLPREDV VSCSISGAES LNQAPQASAV CSTVCEPELI VPSTSETKKI CEPEVNVPST SEAAVAGEAN
201: KRKKHKPTKE DRYNALFDDW TPISTIAMEV DSSSKDDDDW LFGSRTKERR NCKAANKIDE DVRTSSDSSW PKAQFLSQVG IYSLPYTVPF
001: MSRVLTCPPL VFARNHVGVQ NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G75860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.