Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015805.1-P | Field mustard | nucleus | 87.54 | 84.83 |
| CDX73209 | Canola | nucleus | 82.21 | 83.09 |
| CDX76272 | Canola | cytosol | 6.05 | 45.95 |
| CDY44203 | Canola | nucleus | 42.7 | 44.94 |
| CDY29373 | Canola | mitochondrion, nucleus | 41.99 | 43.38 |
| CDY17987 | Canola | plastid | 22.06 | 42.47 |
| AT1G75860.2 | Thale cress | endoplasmic reticulum, plastid, vacuole | 55.87 | 41.64 |
| CDY43413 | Canola | nucleus | 40.93 | 41.22 |
| CDX76271 | Canola | extracellular | 19.22 | 32.73 |
| CDX96256 | Canola | extracellular, plastid | 19.57 | 29.41 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 3.91 | 26.83 |
Protein Annotations
| EnsemblPlants:CDX87654 | EnsemblPlantsGene:GSBRNA2T00146661001 | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:CDX87654 | ProteinID:CDX87654.1 |
| SEG:seg | UniParc:UPI0004EEC59C | MapMan:35.2 | : | : | : |
Description
BnaA07g32190D
Coordinates
chrLK031850:+:1658993..1660852
Molecular Weight (calculated)
31028.6 Da
IEP (calculated)
9.969
GRAVY (calculated)
-0.883
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPSILIARN QASGQNLVDS TKIARIVNDS KTSLPKEKKD KERRKQKKEK REKSHKHSSK KSSKSPGVSE KSGVTEELDG PQNHLGYLSD GSQNSNKRKR
101: DCSPPAVESV VKVVPVAGKP LRIRLTFKKP KLESPLPRED VVTCSTSGAE SLNQAPQATL NVPSTSETKK ICEPEVNVPS ASEAAVAGEA NKRKKHKPTK
201: EDRYNALFDD WTPISTIAME VDCSSKNDDD WLFGSRTKER TSCKAANKID EDVRASCDSS WPKAQFLSQV GIYSLPYTVP F
101: DCSPPAVESV VKVVPVAGKP LRIRLTFKKP KLESPLPRED VVTCSTSGAE SLNQAPQATL NVPSTSETKK ICEPEVNVPS ASEAAVAGEA NKRKKHKPTK
201: EDRYNALFDD WTPISTIAME VDCSSKNDDD WLFGSRTKER TSCKAANKID EDVRASCDSS WPKAQFLSQV GIYSLPYTVP F
001: MSRVLTCPPL VFARNHVGVQ NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G75860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.