Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20100.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT1G20100.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025792.1-P | Field mustard | mitochondrion, nucleus | 98.16 | 98.16 |
| CDX76272 | Canola | cytosol | 12.5 | 91.89 |
| CDY44203 | Canola | nucleus | 89.71 | 91.39 |
| CDY17987 | Canola | plastid | 40.44 | 75.34 |
| CDY43413 | Canola | nucleus | 73.9 | 72.04 |
| AT1G20100.1 | Thale cress | nucleus | 66.18 | 63.16 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 8.82 | 58.54 |
| CDX76271 | Canola | extracellular | 34.93 | 57.58 |
| CDX96256 | Canola | extracellular, plastid | 36.4 | 52.94 |
| CDX73209 | Canola | nucleus | 43.75 | 42.81 |
| CDX87654 | Canola | nucleus | 43.38 | 41.99 |
Protein Annotations
| EnsemblPlants:CDY29373 | EnsemblPlantsGene:GSBRNA2T00042952001 | ncoils:Coil | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:CDY29373 |
| ProteinID:CDY29373.1 | SEG:seg | UniParc:UPI0004EDB7F3 | UniProt:A0A078GXN8 | MapMan:35.2 | : |
Description
BnaA06g14230DBnaA06g14230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXN8]
Coordinates
chrLK032236:+:73614..75055
Molecular Weight (calculated)
30646.2 Da
IEP (calculated)
9.086
GRAVY (calculated)
-0.780
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYFTSPPP VYARNWANGQ NLVESTKIER QIVTSKKVHR KEKKERKKEN KQKLTNEKTI EHLYLPTKQV SDESEQLEKS CLTEEHEKYL SDGSQSSKKR
101: RRDASPSVES NIKATPVTGN PLRIRFVFQK PKEAELVVPQ APQEVLVCST SGTEISSSVS GHDGNLLPAS LASDETAILS ELKKKKKHKT SKESRYSSLF
201: DEPVLPCLSI EEDSSNSDDW LLGARRQKNV STKSAMNEDM VINMQKSGES CFPSSQFLSE VGIFSLPYTV LF
101: RRDASPSVES NIKATPVTGN PLRIRFVFQK PKEAELVVPQ APQEVLVCST SGTEISSSVS GHDGNLLPAS LASDETAILS ELKKKKKHKT SKESRYSSLF
201: DEPVLPCLSI EEDSSNSDDW LLGARRQKNV STKSAMNEDM VINMQKSGES CFPSSQFLSE VGIFSLPYTV LF
001: MSRYFTSPPP VYARNWANGQ NLVEWTKIER PIVDSKKLHR KEKKEKKKEK KLKKEKKSLE QKYSTTKTVS YESEQLEKSC LTEEFEQPQV GYLSDGSQNS
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
101: KKRRRETSPA VVESQIKATP VAGKPLRIRI VFKKPKEAEA VPQEDPVCST SGTQRPSELP SSVSLPSICD HDVAVPSTSL ESGKVAIISE SKKRKKHKPS
201: KESRYNSLFD ELVPPCISLE EDDSSSDDWL FGTSRKENVS SAKSSYKTDE DTIMSLQTSR DCSSLPRAML LSEVGIFSLP YTVPF
Arabidopsis Description
DNA ligase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LNT6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.