Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009112.1-P | Field mustard | nucleus | 96.36 | 96.36 |
| CDX98843 | Canola | nucleus | 84.55 | 83.53 |
| CDY04950 | Canola | nucleus | 67.58 | 68.83 |
| CDY52149 | Canola | nucleus | 66.67 | 67.07 |
| AT5G05410.1 | Thale cress | nucleus | 64.85 | 63.88 |
| CDY36289 | Canola | nucleus | 50.3 | 57.04 |
| CDY67039 | Canola | nucleus | 50.0 | 56.51 |
| CDY00987 | Canola | nucleus | 49.39 | 52.41 |
| CDY08557 | Canola | nucleus | 47.58 | 50.0 |
| CDX73896 | Canola | nucleus | 52.42 | 45.29 |
| CDY33815 | Canola | nucleus | 15.45 | 44.35 |
| CDX93190 | Canola | nucleus | 24.55 | 38.03 |
| CDY39036 | Canola | nucleus | 18.79 | 31.31 |
| CDY47519 | Canola | nucleus | 19.39 | 31.07 |
| CDY70626 | Canola | nucleus | 19.09 | 30.88 |
| CDX68128 | Canola | nucleus | 19.09 | 30.88 |
| CDY20377 | Canola | nucleus | 18.48 | 30.81 |
| HORVU6Hr1G050500.2 | Barley | nucleus | 27.88 | 30.67 |
| CDY52924 | Canola | nucleus | 31.21 | 30.65 |
| CDY64211 | Canola | nucleus, plastid | 19.09 | 30.58 |
| CDY71905 | Canola | nucleus | 22.42 | 30.33 |
| CDY54455 | Canola | nucleus | 22.12 | 29.55 |
| HORVU6Hr1G050520.2 | Barley | nucleus | 21.21 | 29.54 |
| KXG21735 | Sorghum | nucleus | 29.7 | 29.17 |
| CDY00719 | Canola | nucleus | 20.3 | 28.27 |
| Zm00001d010048_P004 | Maize | nucleus | 29.39 | 26.43 |
| CDY06088 | Canola | nucleus | 21.52 | 26.3 |
| TraesCS1D01G223600.2 | Wheat | nucleus | 30.91 | 26.09 |
| TraesCS1B01G235100.2 | Wheat | nucleus | 30.61 | 26.03 |
| CDX70820 | Canola | nucleus | 21.82 | 25.71 |
| CDX72012 | Canola | nucleus | 21.21 | 25.64 |
| CDY61527 | Canola | nucleus | 22.42 | 25.17 |
| TraesCS1A01G221900.1 | Wheat | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.61 | 24.82 |
| CDY58117 | Canola | nucleus | 21.52 | 24.57 |
| CDY52095 | Canola | nucleus | 19.7 | 24.44 |
| CDY02629 | Canola | nucleus | 21.21 | 24.31 |
| CDX88955 | Canola | nucleus | 18.79 | 23.85 |
| CDX92610 | Canola | nucleus | 21.52 | 23.2 |
| HORVU1Hr1G060490.5 | Barley | plasma membrane | 31.21 | 22.79 |
| CDY25420 | Canola | nucleus | 21.52 | 21.65 |
| CDY54991 | Canola | nucleus | 18.18 | 17.8 |
| CDY52427 | Canola | nucleus | 17.27 | 17.65 |
| CDY07614 | Canola | nucleus | 16.67 | 16.37 |
| CDY33814 | Canola | nucleus | 3.33 | 12.64 |
Protein Annotations
| MapMan:15.5.7.2 | Gene3D:3.30.730.10 | GO:A0A078BZM6 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX70151 |
| ProteinID:CDX70151 | ProteinID:CDX70151.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00136263001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31241 | PANTHER:PTHR31241:SF2 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EEF301 | SEG:seg | : | : | : | : |
Description
BnaA10g25000D
Coordinates
chrLK031790:-:3333293..3334847
Molecular Weight (calculated)
36722.4 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.806
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYEHNKTE FDTTKKRKTR SRRDGTTVAD RIKMWKEYND TVQESPTNKR KVPAKGSKKG CMKGKGGPEN GGCSFRGVRQ RTWGKWVAEI REPNRGSRLW
101: LGTFPTAEKA AAAYDEAAKA MYGPLARVNF PQASVSDVAS TSSWSEVCTV ETPGVVHVKT EDADCESPMA RVENDVHEGA EEMEMDVNVH AAVDTPSKDW
201: LSEIEQEYWT GLLEEKQKQK EQEMVAAGDF QKQPDALSVS DYGWPADLYQ NQWDSLEMFD VAELLGDLNG DIFTDTNQSQ CLGDNVGGGL PEPEKQQLQS
301: LGSDYGLSPL QHEAQDGGDF FDLSFLDVKN
101: LGTFPTAEKA AAAYDEAAKA MYGPLARVNF PQASVSDVAS TSSWSEVCTV ETPGVVHVKT EDADCESPMA RVENDVHEGA EEMEMDVNVH AAVDTPSKDW
201: LSEIEQEYWT GLLEEKQKQK EQEMVAAGDF QKQPDALSVS DYGWPADLYQ NQWDSLEMFD VAELLGDLNG DIFTDTNQSQ CLGDNVGGGL PEPEKQQLQS
301: LGSDYGLSPL QHEAQDGGDF FDLSFLDVKN
001: MAVYDQSGDR NRTQIDTSRK RKSRSRGDGT TVAERLKRWK EYNETVEEVS TKKRKVPAKG SKKGCMKGKG GPENSRCSFR GVRQRIWGKW VAEIREPNRG
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
101: SRLWLGTFPT AQEAASAYDE AAKAMYGPLA RLNFPRSDAS EVTSTSSQSE VCTVETPGCV HVKTEDPDCE SKPFSGGVEP MYCLENGAEE MKRGVKADKH
201: WLSEFEHNYW SDILKEKEKQ KEQGIVETCQ QQQQDSLSVA DYGWPNDVDQ SHLDSSDMFD VDELLRDLNG DDVFAGLNQD RYPGNSVANG SYRPESQQSG
301: FDPLQSLNYG IPPFQLEGKD GNGFFDDLSY LDLEN
Arabidopsis Description
DREB2ADehydration-responsive element-binding protein 2A [Source:UniProtKB/Swiss-Prot;Acc:O82132]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.