CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	CDX70151	AT5G05410.1	18552202
AT3G25920.1	CDX98843	AT5G05410.1	18552202
AT3G25920.1	CDY04950	AT5G05410.1	18552202
AT3G25920.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017341.1-P	Field mustard	plastid	96.43	96.43
CDY04186	Canola	plastid	88.93	89.25
CDX83573	Canola	plastid	87.5	88.13
CDY13600	Canola	plastid	82.5	85.24
AT3G25920.1	Thale cress	plastid	83.57	84.48
KRG90820	Soybean	plastid	62.5	68.36
Solyc05g009370.2.1	Tomato	plastid	65.36	67.53
VIT_01s0011g03590.t01	Wine grape	plastid	61.07	65.27
PGSC0003DMT400037705	Potato	plastid	63.57	64.49
GSMUA_Achr1P22410_001	Banana	mitochondrion	45.0	61.16
KRH35950	Soybean	cytosol	38.57	58.38
TraesCS4B01G242800.1	Wheat	plastid	55.0	58.33
TraesCS4A01G065400.1	Wheat	plastid	55.0	58.11
TraesCS4D01G242400.1	Wheat	plastid	54.29	57.36
Zm00001d028240_P001	Maize	plastid	54.29	56.93
Os03t0219900-01	Rice	plastid	52.86	56.27
EER95259	Sorghum	plastid	53.93	56.13
CDY18700	Canola	mitochondrion, plastid	24.64	24.82
CDX81240	Canola	mitochondrion, plastid	24.64	24.56
CDX84541	Canola	mitochondrion, plastid	24.29	24.2
CDY08860	Canola	mitochondrion, plastid	23.57	23.49

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:A0A078JYR4	UniProt:A0A078JYR4	EnsemblPlants:CDY70691	ProteinID:CDY70691
ProteinID:CDY70691.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00005324001
InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071
UniParc:UPI0004EB9C88	SEG:seg	:	:	:	:

Description

BnaC09g52400DBnaC09g52400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYR4]

Coordinates

chrLK042967:+:664..1899

Molecular Weight (calculated)

29850.1 Da

IEP (calculated)

11.578

GRAVY (calculated)

-0.457

Length

280 amino acids

Sequence
(BLAST)

001: MAVPLSISSN SLLSRQNHRL SFPSTSFKGN VSVLGQHPSP ILSLKLHYNR RVGKQQQIAR PLVVLNQTTA ATSSSPGAVS SERFRLDNLG PQPGSRKRAK
101: RKGRGISAGQ GASCGFGMRG QKSRSGPGIM RGFEGGQTAL YRRLPKLRGI AGGMRAGLPK YVPVNLKDIE TAGFEDGDEV SLETLKQKGL INPSGRERKL
201: PLKILGTGEL SVKLSFKARA FSTSAKEKLE ASGCTLTVLP GRKKWVKPSV AKNQARADEY FAKKRAAAAE AAASEPAASA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.