CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037788.1-P	Field mustard	mitochondrion, plastid	91.73	91.73
CDX81240	Canola	mitochondrion, plastid	90.65	89.68
AT5G64670.1	Thale cress	mitochondrion, plastid	89.21	88.26
CDX84541	Canola	mitochondrion, plastid	88.13	87.19
CDY08860	Canola	mitochondrion, plastid	87.41	86.48
KRH13508	Soybean	cytosol	27.34	73.79
VIT_13s0019g04930.t01	Wine grape	mitochondrion	72.3	71.02
Solyc02g081310.2.1	Tomato	plastid	67.27	66.31
PGSC0003DMT400043119	Potato	mitochondrion, plastid	67.27	66.31
KRH43653	Soybean	mitochondrion	65.11	64.64
KRH13797	Soybean	mitochondrion	64.75	64.29
EES00619	Sorghum	mitochondrion	65.47	62.33
Zm00001d040588_P004	Maize	mitochondrion	64.03	62.02
Os08t0310100-01	Rice	nucleus	64.39	60.68
GSMUA_Achr11P...	Banana	mitochondrion	64.03	60.54
TraesCS3A01G268300.1	Wheat	mitochondrion	62.95	59.52
TraesCS3B01G302700.1	Wheat	mitochondrion	62.95	58.92
TraesCS3D01G268400.1	Wheat	mitochondrion	62.95	58.92
HORVU3Hr1G062510.1	Barley	plastid	64.39	54.74
HORVU4Hr1G078100.1	Barley	plastid	20.5	44.19
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	24.1	41.1
CDY13600	Canola	plastid	24.46	25.09
CDY70691	Canola	plastid	24.82	24.64
CDX83573	Canola	plastid	23.38	23.38
CDY04186	Canola	plastid	23.38	23.3

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	GO:A0A078FW95	UniProt:A0A078FW95	EnsemblPlants:CDY18700	ProteinID:CDY18700
ProteinID:CDY18700.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005781001	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type
InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0004EE540D	SEG:seg	:

Description

BnaA09g06950DBnaA09g06950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FW95]

Coordinates

chrLK032087:+:606677..608095

Molecular Weight (calculated)

31060.2 Da

IEP (calculated)

11.791

GRAVY (calculated)

-0.548

Length

278 amino acids

Sequence
(BLAST)

001: MIRRRISSII STSLLNSSIH HTSKPRFVTS SPLLQCRRSP ILTQTPTFAR SFQGIRAYSL LSLNDLRDNV PRKLKTRKGR GIGSGKGKTA GRGHKGQKAR
101: GTMKFGFEGG QTPLRRRLPK RGFKNKFKLH FQPVGLGKIA KLINAGEIDS HELITMKTLK DVGAIGKQIE DGVRLMGRGA DEIKWPLHFE VSRVTVRAKE
201: VVEAAGGSVR RVYYNKLGLR ALLKPEWFEK KGRLLPKAAR PPPKQQDRVD SIGRLPAPKK PIPFFSAEEN KVESLVES

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.