CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	CDX70151	AT5G05410.1	18552202
AT3G25920.1	CDX98843	AT5G05410.1	18552202
AT3G25920.1	CDY04950	AT5G05410.1	18552202
AT3G25920.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025174.1-P	Field mustard	plastid	97.42	97.78
CDX83573	Canola	plastid	89.67	87.41
CDY70691	Canola	plastid	85.24	82.5
CDY04186	Canola	plastid	83.39	81.0
AT3G25920.1	Thale cress	plastid	82.29	80.51
KRG90820	Soybean	plastid	62.73	66.41
Solyc05g009370.2.1	Tomato	plastid	66.05	66.05
VIT_01s0011g03590.t01	Wine grape	plastid	62.36	64.5
PGSC0003DMT400037705	Potato	plastid	63.47	62.32
GSMUA_Achr1P22410_001	Banana	mitochondrion	46.13	60.68
KRH35950	Soybean	cytosol	39.48	57.84
TraesCS4B01G242800.1	Wheat	plastid	54.98	56.44
TraesCS4A01G065400.1	Wheat	plastid	54.61	55.85
TraesCS4D01G242400.1	Wheat	plastid	54.24	55.47
EER95259	Sorghum	plastid	54.98	55.39
Zm00001d028240_P001	Maize	plastid	54.24	55.06
Os03t0219900-01	Rice	plastid	52.77	54.37
CDX84541	Canola	mitochondrion, plastid	25.46	24.56
CDY18700	Canola	mitochondrion, plastid	25.09	24.46
CDX81240	Canola	mitochondrion, plastid	25.09	24.2
CDY08860	Canola	mitochondrion, plastid	24.72	23.84

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:A0A078FGQ0	UniProt:A0A078FGQ0	EnsemblPlants:CDY13600	ProteinID:CDY13600
ProteinID:CDY13600.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00078010001
InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071
UniParc:UPI0004EF2965	SEG:seg	:	:	:	:

Description

BnaA06g33230DBnaA06g33230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGQ0]

Coordinates

chrLK032037:-:196014..197117

Molecular Weight (calculated)

29009.2 Da

IEP (calculated)

11.419

GRAVY (calculated)

-0.470

Length

271 amino acids

Sequence
(BLAST)

001: MAVPLPLSVS TNPLISRHCH RLYSPSTSFK GNVSVLGANP CHILSRKLHL KRRSGPLLVF NQTSSSSSPG SERFRLDNLG PQPGSRKRAK RKGRGISAGQ
101: GASCGFGMRG QKSRSGPGIM RGFEGGQTAL YRRLPKLRGI AGGMRSGLPK YVPVNLKDIE TAGFEDGDEV SLETLKQKGL INPSGRERKL PLKILGTGEL
201: NVKLNFKARA FSTSAKEKLE ASGCTLTVLP GRKKWVKPSV AKNLARADEY FAKKRAAAAE TAASEPAATS A

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.