Factsheet for Zm00001d028240_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95259	Sorghum	plastid	94.38	93.68
Os03t0219900-01	Rice	plastid	78.65	79.85
TraesCS4B01G242800.1	Wheat	plastid	77.15	78.03
TraesCS4D01G242400.1	Wheat	plastid	75.66	76.23
TraesCS4A01G065400.1	Wheat	plastid	75.66	76.23
KRG90820	Soybean	plastid	57.68	60.16
VIT_01s0011g03590.t01	Wine grape	plastid	58.43	59.54
Solyc05g009370.2.1	Tomato	plastid	60.3	59.41
PGSC0003DMT400037705	Potato	plastid	59.93	57.97
GSMUA_Achr1P22410_001	Banana	mitochondrion	44.19	57.28
CDY04186	Canola	plastid	58.43	55.91
Bra017341.1-P	Field mustard	plastid	58.05	55.36
Bra025174.1-P	Field mustard	plastid	55.81	55.19
KRH35950	Soybean	cytosol	37.83	54.59
CDY70691	Canola	plastid	56.93	54.29
CDY13600	Canola	plastid	55.06	54.24
AT3G25920.1	Thale cress	plastid	55.43	53.43
CDX83573	Canola	plastid	55.06	52.88
Zm00001d040588_P004	Maize	mitochondrion	25.47	23.69

Protein Annotations

EntrezGene:100273366	MapMan:17.7.2.1.13	Gene3D:3.100.10.10	UniProt:B4FUZ9	EMBL:BT040937	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:L18e/L15P_sf	HAMAP:MF_01341	ProteinID:ONL95167.1
PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS
InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	SignalP:SignalP-noTM	TIGRFAMs:TIGR01071	UniParc:UPI00017B809B
EnsemblPlantsGene:Zm00001d028240	EnsemblPlants:Zm00001d028240_P001	EnsemblPlants:Zm00001d028240_T001	SEG:seg	:	:

Description

50S ribosomal protein L15 chloroplastic

Coordinates

chr1:+:27695825..27697683

Molecular Weight (calculated)

28238.5 Da

IEP (calculated)

11.404

GRAVY (calculated)

-0.288

Length

267 amino acids

Sequence
(BLAST)

001: MASITLLSLA PTAIFLHIPA FTSSSVVGPG ILAGRWAAPR ALPLRALPPR RVTVVCSSAA AAAEASDAAA PVEKFRLDNL GPQKGSRRRP KRKGRGIAAG
101: QGASCGFGMR GQKSRSGPGV RRGFEGGQMP LYRRLPKLRG IAGGMHIGLP KYVPFNLKDI VRGGFKDGDE ISLESLKSRG LINPSGRERK LPLKILGDGD
201: VSVKLNIKAG AFSASAKEKL EAAGCSLTLL PKRKKWLPQN YLKNQARAEE YFAKKKAGAG ESDSGSA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.