Factsheet for PGSC0003DMT400037705

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009370.2.1	Tomato	plastid	84.06	85.61
VIT_01s0011g03590.t01	Wine grape	plastid	70.29	74.05
KRG90820	Soybean	plastid	61.59	66.41
GSMUA_Achr1P22410_001	Banana	mitochondrion	48.91	65.53
Bra025174.1-P	Field mustard	plastid	63.04	64.44
Bra017341.1-P	Field mustard	plastid	64.86	63.93
CDY70691	Canola	plastid	64.49	63.57
CDY13600	Canola	plastid	62.32	63.47
CDY04186	Canola	plastid	63.41	62.72
CDX83573	Canola	plastid	63.04	62.59
AT3G25920.1	Thale cress	plastid	62.68	62.45
KRH35950	Soybean	cytosol	40.94	61.08
Zm00001d028240_P001	Maize	plastid	57.97	59.93
TraesCS4B01G242800.1	Wheat	plastid	57.25	59.85
TraesCS4A01G065400.1	Wheat	plastid	56.88	59.25
TraesCS4D01G242400.1	Wheat	plastid	56.88	59.25
Os03t0219900-01	Rice	plastid	55.43	58.17
EER95259	Sorghum	plastid	55.8	57.25
PGSC0003DMT400043119	Potato	mitochondrion, plastid	23.55	23.05

Protein Annotations

EntrezGene:102604819	MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	InterPro:L18e/L15P_sf	UniProt:M1B5R1	HAMAP:MF_01341	PFAM:PF00828	EnsemblPlantsGene:PGSC0003DMG400014544
PGSC:PGSC0003DMG400014544	EnsemblPlants:PGSC0003DMT400037705	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI000296AED5
RefSeq:XP_006344133.1	SEG:seg	:	:	:	:

Description

50S ribosomal protein L15 [Source:PGSC_GENE;Acc:PGSC0003DMG400014544]

Coordinates

chr5:+:2846037..2852520

Molecular Weight (calculated)

29235.2 Da

IEP (calculated)

11.334

GRAVY (calculated)

-0.413

Length

276 amino acids

Sequence
(BLAST)

001: MASLLSISSA APARTNSIVT HFSSSFKGNV SNLKSSSKLL PLIKVCNQKS KSITRTPFVV FNQTASFGAA SADSATGSVR FRLNNLGPQP GATKNRKRKG
101: RGHSAGQGGS CGFGMRGQKS RSGPGVRKGF EGGQMPLYRR LPKLRGIAGG MHAGLPKYVP VNLKDIEEAG FQEGEEVSLE SLKQKGLINP SGRERRLPLK
201: ILGDGELSVK LNFKARAFSS SAKEKLEAVG CSLTVLPGRK KWVKPSVAKN LARAEEYFAK KRAAAAAAES ADSSSA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.