Factsheet for Solyc05g009370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037705	Potato	plastid	85.61	84.06
VIT_01s0011g03590.t01	Wine grape	plastid	67.53	69.85
KRG90820	Soybean	plastid	63.84	67.58
Bra025174.1-P	Field mustard	plastid	66.42	66.67
GSMUA_Achr1P22410_001	Banana	mitochondrion	50.55	66.5
CDY13600	Canola	plastid	66.05	66.05
Bra017341.1-P	Field mustard	plastid	67.9	65.71
CDY70691	Canola	plastid	67.53	65.36
CDY04186	Canola	plastid	66.42	64.52
CDX83573	Canola	plastid	66.05	64.39
AT3G25920.1	Thale cress	plastid	65.31	63.9
KRH35950	Soybean	cytosol	41.33	60.54
Zm00001d028240_P001	Maize	plastid	59.41	60.3
TraesCS4B01G242800.1	Wheat	plastid	57.93	59.47
TraesCS4A01G065400.1	Wheat	plastid	57.93	59.25
TraesCS4D01G242400.1	Wheat	plastid	57.56	58.87
Os03t0219900-01	Rice	plastid	56.09	57.79
EER95259	Sorghum	plastid	57.2	57.62
Solyc02g081310.2.1	Tomato	plastid	23.62	22.7

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719
GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
UniProt:K4BXB1	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934
PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080
EnsemblPlantsGene:Solyc05g009370.2	EnsemblPlants:Solyc05g009370.2.1	TIGRFAMs:TIGR01071	UniParc:UPI0002766A65	SEG:seg	:

Description

50S ribosomal protein L15, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G25920) UniProtKB/Swiss-Prot;Acc:P25873]

Coordinates

chr5:-:3518447..3524365

Molecular Weight (calculated)

28879.9 Da

IEP (calculated)

11.334

GRAVY (calculated)

-0.438

Length

271 amino acids

Sequence
(BLAST)

001: MASLLSISSA SPTRTNSIIT QFSSSFKGNV SNLKSSSKLL PLIKVCNLKS KSITRTPFVV FNQTASFGAD SATGSVRFRL NNLGPQPGAT KNRKRKGRGH
101: SAGQGGSCGF GMRGQKSRSG PGVRKGFEGG QMPLYRRLPK LRGIAGGMHA GLPKYVPVNL KDIEEAGFQE GEEVSLESLK QKGLINPSGR ERRLPLKILG
201: DGELSVKLNF KARAFSTSAK EKLEAAGCSL TVLPGRKKWV KPSVAKNLAR AEEYFAKKRA AAAESADPSA A

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.