Factsheet for GSMUA_Achr1P22410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90820	Soybean	plastid	65.05	52.34
KRH35950	Soybean	cytosol	46.12	51.35
Solyc05g009370.2.1	Tomato	plastid	66.5	50.55
VIT_01s0011g03590.t01	Wine grape	plastid	63.11	49.62
PGSC0003DMT400037705	Potato	plastid	65.53	48.91
Bra025174.1-P	Field mustard	plastid	61.16	46.67
CDY13600	Canola	plastid	60.68	46.13
CDY70691	Canola	plastid	61.16	45.0
CDX83573	Canola	plastid	60.68	44.96
CDY04186	Canola	plastid	60.68	44.8
TraesCS4B01G242800.1	Wheat	plastid	57.28	44.7
Bra017341.1-P	Field mustard	plastid	60.68	44.64
TraesCS4A01G065400.1	Wheat	plastid	57.28	44.53
Zm00001d028240_P001	Maize	plastid	57.28	44.19
TraesCS4D01G242400.1	Wheat	plastid	56.8	44.15
AT3G25920.1	Thale cress	plastid	59.22	44.04
Os03t0219900-01	Rice	plastid	55.34	43.35
EER95259	Sorghum	plastid	56.31	43.12
GSMUA_Achr11P...	Banana	mitochondrion	17.96	12.59
GSMUA_Achr10P...	Banana	cytosol	5.83	8.28

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719
GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr1G22410_001	EnsemblPlants:GSMUA_Achr1P22410_001	EnsemblPlants:GSMUA_Achr1T22410_001	InterPro:L18e/L15P_sf	UniProt:M0S249	PFAM:PF00828
ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI000296AA6B	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G22410_001]

Coordinates

chr1:-:16900118..16903405

Molecular Weight (calculated)

22388.2 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.190

Length

206 amino acids

Sequence
(BLAST)

001: MRGQKSRSGP GVRKGFEGGQ MPLYRRIPKL RGIAGGMHAG LPKFVPVNLK DIEDAGFEEG DEVSLESLKA KGLINPSGRE RRLPLKILGD GALSVKVTVK
101: ARAFSAAAKE KLEAAGCTLT ALPGRKKWVK PSVAKNLARA DEYFARKRAA AADSFSSTTC FEYFSEDAHV VCDICFSKLL IQSSAFSYVY MILFEHGLLG
201: PNDFKA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.