CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35950	Soybean	cytosol	49.61	68.65
GSMUA_Achr1P22410_001	Banana	mitochondrion	52.34	65.05
CDY04186	Canola	plastid	69.92	64.16
Solyc05g009370.2.1	Tomato	plastid	67.58	63.84
Bra025174.1-P	Field mustard	plastid	67.19	63.7
VIT_01s0011g03590.t01	Wine grape	plastid	64.84	63.36
Bra017341.1-P	Field mustard	plastid	68.75	62.86
CDY13600	Canola	plastid	66.41	62.73
CDY70691	Canola	plastid	68.36	62.5
AT3G25920.1	Thale cress	plastid	67.58	62.45
CDX83573	Canola	plastid	67.58	62.23
PGSC0003DMT400037705	Potato	plastid	66.41	61.59
Zm00001d028240_P001	Maize	plastid	60.16	57.68
Os03t0219900-01	Rice	plastid	58.59	57.03
EER95259	Sorghum	plastid	59.38	56.51
TraesCS4B01G242800.1	Wheat	plastid	58.2	56.44
TraesCS4A01G065400.1	Wheat	plastid	58.2	56.23
TraesCS4D01G242400.1	Wheat	plastid	57.81	55.85
KRH43653	Soybean	mitochondrion	24.61	22.5
KRH13797	Soybean	mitochondrion	24.61	22.5
KRH13508	Soybean	cytosol	7.03	17.48

Protein Annotations

EntrezGene:100306183	MapMan:17.7.2.1.13	Gene3D:3.100.10.10	EMBL:ACUP02012646	EMBL:BT090168	UniProt:C6SYC0
EnsemblPlantsGene:GLYMA_20G116100	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlants:KRG90820
ProteinID:KRG90820	ProteinID:KRG90820.1	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475
PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0001B15780	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:35812162..35815597

Molecular Weight (calculated)

27587.0 Da

IEP (calculated)

11.646

GRAVY (calculated)

-0.425

Length

256 amino acids

Sequence
(BLAST)

001: MGSASLIPVS WLPWRPLSPF KGTVKTLVAK PWLKKIQQAR PLISVVNKAA SLSSPVTAPS VGVRFRLDNL GPQPGSRKRA KRKGRGISAG QGASCGFGMR
101: GQKSRSGPGV RKGFEGGQMP LYRRIPKLRG IAGGMHAGLP KYVHVNLRDI EDAKFKEGEE VSLESLKAKG VINPSGRERR LPLKILGEGE LSKKLTLKAR
201: AFSTSAKEKL ENAGCSLTVL PGRKKWVKPS VAKNLARADE YFAKKRAMAA SEPASA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.