CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13508	Soybean	cytosol	35.71	97.09
KRH13797	Soybean	mitochondrion	96.79	96.79
VIT_13s0019g04930.t01	Wine grape	mitochondrion	67.5	66.78
Solyc02g081310.2.1	Tomato	plastid	66.07	65.6
PGSC0003DMT400043119	Potato	mitochondrion, plastid	65.71	65.25
CDY08860	Canola	mitochondrion, plastid	65.36	65.12
CDY18700	Canola	mitochondrion, plastid	64.64	65.11
Bra024320.1-P	Field mustard	mitochondrion, plastid	65.0	64.77
CDX84541	Canola	mitochondrion, plastid	64.64	64.41
Zm00001d040588_P004	Maize	mitochondrion	65.71	64.11
CDX81240	Canola	mitochondrion, plastid	64.29	64.06
AT5G64670.1	Thale cress	mitochondrion, plastid	64.29	64.06
Bra037788.1-P	Field mustard	mitochondrion, plastid	62.86	63.31
EES00619	Sorghum	mitochondrion	65.71	63.01
GSMUA_Achr11P...	Banana	mitochondrion	65.71	62.59
Os08t0310100-01	Rice	nucleus	64.64	61.36
TraesCS3A01G268300.1	Wheat	mitochondrion	63.21	60.2
TraesCS3D01G268400.1	Wheat	mitochondrion	63.21	59.6
TraesCS3B01G302700.1	Wheat	mitochondrion	62.86	59.26
HORVU3Hr1G062510.1	Barley	plastid	61.79	52.91
HORVU4Hr1G078100.1	Barley	plastid	19.64	42.64
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	22.14	38.04
KRH35950	Soybean	cytosol	16.43	24.86
KRG90820	Soybean	plastid	22.5	24.61

Protein Annotations

EntrezGene:100792247	MapMan:17.7.1.1.13	Gene3D:3.100.10.10	EMBL:ACUP02004874	EnsemblPlantsGene:GLYMA_08G162600	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005762	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	UniProt:I1KTV3	EnsemblPlants:KRH43653
ProteinID:KRH43653	ProteinID:KRH43653.1	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	PANTHER:PTHR12934
PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071
UniParc:UPI00023383E6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:12730206..12734277

Molecular Weight (calculated)

31024.1 Da

IEP (calculated)

11.714

GRAVY (calculated)

-0.574

Length

280 amino acids

Sequence
(BLAST)

001: MLRRRLSVLS TSITRSSNYS KPSLGYPSIQ SHPFQLPHSP SAYQIISPNA FPDFQGFRAY SLLSLNDLRD KVPRKQPTRK GRGIGSGKGK TAGRGHKGQR
101: ARKGIKLGFE GGQTPLRRRL PKRGFKNPFS LTFQPIGLGK IAKFINAGKI DSSELITMKT LKDAGVLGKQ MKDGVRLMGR GSEQIKWPIH LEVSRVTVRA
201: KEAVEAAGGS VRRVYYNKLG LKALVKPEWF EKKGRLLPKA ARPPPKQKDK VDSIGRLPAP TKPFPFLVEA SKDLPVQHLS

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.