Factsheet for PGSC0003DMT400043119

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081310.2.1	Tomato	plastid	96.1	96.1
KRH13508	Soybean	cytosol	27.66	75.73
VIT_13s0019g04930.t01	Wine grape	mitochondrion	69.15	68.9
CDY18700	Canola	mitochondrion, plastid	66.31	67.27
AT5G64670.1	Thale cress	mitochondrion, plastid	67.02	67.26
Zm00001d040588_P004	Maize	mitochondrion	68.44	67.25
EES00619	Sorghum	mitochondrion	68.79	66.44
GSMUA_Achr11P...	Banana	mitochondrion	69.15	66.33
Bra024320.1-P	Field mustard	mitochondrion, plastid	65.96	66.19
KRH13797	Soybean	mitochondrion	65.6	66.07
CDY08860	Canola	mitochondrion, plastid	65.6	65.84
CDX81240	Canola	mitochondrion, plastid	65.6	65.84
KRH43653	Soybean	mitochondrion	65.25	65.71
CDX84541	Canola	mitochondrion, plastid	65.25	65.48
Os08t0310100-01	Rice	nucleus	67.38	64.41
Bra037788.1-P	Field mustard	mitochondrion, plastid	63.48	64.39
TraesCS3A01G268300.1	Wheat	mitochondrion	66.67	63.95
TraesCS3B01G302700.1	Wheat	mitochondrion	66.67	63.3
TraesCS3D01G268400.1	Wheat	mitochondrion	66.67	63.3
HORVU3Hr1G062510.1	Barley	plastid	65.6	56.57
HORVU4Hr1G078100.1	Barley	plastid	20.92	45.74
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	24.47	42.33
PGSC0003DMT400037705	Potato	plastid	23.05	23.55

Protein Annotations

EntrezGene:102588688	MapMan:17.7.1.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
InterPro:L18e/L15P_sf	UniProt:M1BE47	HAMAP:MF_01341	PFAM:PF00828	EnsemblPlantsGene:PGSC0003DMG400016731	PGSC:PGSC0003DMG400016731
EnsemblPlants:PGSC0003DMT400043119	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI000295D620	RefSeq:XP_006348181.1	SEG:seg	:

Description

60S ribosomal protein L10, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400016731]

Coordinates

chr2:-:36945099..36948626

Molecular Weight (calculated)

31054.0 Da

IEP (calculated)

11.749

GRAVY (calculated)

-0.539

Length

282 amino acids

Sequence
(BLAST)

001: MLRRRITSLL SSSTLQNVPI YSEPIKISHH IFTSSQKFPF LQFSQRPISS IGSLGCQFRR AYSLLSLNDL QDNKGARKQK TRKGRGIGSG KGKTAGRGHK
101: GQKARGTYKF GFEGGQTPLR RRVPKRGFKN PFSLTFQPVG LGKIAKLINA GKIDSSELIT MKTLKDSGAI GKQIEDGARL MGRGAEHIQW PIHLEVSRVT
201: ARAKAAVEAA GGSVRRVHYN KLGLRALLKP EWFEKKGRLL PRPARPPPKL KDKVDSIGRL PAPTKPLPFV TEEAESMSAT PA

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.