Factsheet for Os08t0310100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040588_P004	Maize	mitochondrion	81.36	83.62
EES00619	Sorghum	mitochondrion	82.03	82.88
TraesCS3A01G268300.1	Wheat	mitochondrion	77.97	78.23
TraesCS3D01G268400.1	Wheat	mitochondrion	78.64	78.11
TraesCS3B01G302700.1	Wheat	mitochondrion	78.31	77.78
KRH13508	Soybean	cytosol	25.08	71.84
VIT_13s0019g04930.t01	Wine grape	mitochondrion	65.08	67.84
Solyc02g081310.2.1	Tomato	plastid	64.41	67.38
PGSC0003DMT400043119	Potato	mitochondrion, plastid	64.41	67.38
HORVU3Hr1G062510.1	Barley	plastid	74.58	67.28
GSMUA_Achr11P...	Banana	mitochondrion	65.42	65.65
Bra024320.1-P	Field mustard	mitochondrion, plastid	61.69	64.77
KRH43653	Soybean	mitochondrion	61.36	64.64
CDY18700	Canola	mitochondrion, plastid	60.68	64.39
KRH13797	Soybean	mitochondrion	61.02	64.29
CDY08860	Canola	mitochondrion, plastid	61.02	64.06
CDX84541	Canola	mitochondrion, plastid	61.02	64.06
AT5G64670.1	Thale cress	mitochondrion, plastid	61.02	64.06
CDX81240	Canola	mitochondrion, plastid	60.68	63.7
Bra037788.1-P	Field mustard	mitochondrion, plastid	58.98	62.59
HORVU4Hr1G078100.1	Barley	plastid	25.76	58.91
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	25.42	46.01
Os03t0219900-01	Rice	plastid	21.36	23.95

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	EntrezGene:4345238	ProteinID:AAQ56383.1	EMBL:AK073645	ProteinID:BAD32079.1
ProteinID:BAF23426.1	ProteinID:BAT04842.1	ProteinID:EEE68249.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	InterPro:L18e/L15P_sf	HAMAP:MF_01341	EnsemblPlantsGene:Os08g0310100	EnsemblPlants:Os08t0310100-01
PFAM:PF00828	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	UniProt:Q6UUH5	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type
InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI00002325FC	RefSeq:XP_015648420.1	SEG:seg

Description

Cen8.t00833Ribosomal protein L15 family protein. (Os08t0310100-01)

Coordinates

chr8:+:13072680..13076026

Molecular Weight (calculated)

31770.9 Da

IEP (calculated)

12.200

GRAVY (calculated)

-0.449

Length

295 amino acids

Sequence
(BLAST)

001: MWRRASHLLR ATATATATAV SRRVPHPHPA PATAISTVLP APKLASSLSY ATQAAAAAAV PAARAPRTVG SLLRLNDLRD NPGARKQKTR KGRGIGSGKG
101: KTAGRGHKGQ KARGTARFGF EGGQTPLRRR LPRRGFKNRF SLTFQPCGLG KIAKLINAGK IDSSELITMK TLKDTGAIGK QIKDGIRLMG RGAEEIKWPI
201: HLEVSRTTAR AKAAVEAAGG TVRLVYYNNL GFRALLKPEW FAKKGRLLPK AARPPPKQRD KVDSIGRLPA PTKPLPFTPE ELEFAAKREA ARVIA

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.