Factsheet for Solyc02g081310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043119	Potato	mitochondrion, plastid	96.1	96.1
KRH13508	Soybean	cytosol	28.01	76.7
VIT_13s0019g04930.t01	Wine grape	mitochondrion	68.44	68.2
Zm00001d040588_P004	Maize	mitochondrion	68.79	67.6
CDY18700	Canola	mitochondrion, plastid	66.31	67.27
AT5G64670.1	Thale cress	mitochondrion, plastid	67.02	67.26
KRH13797	Soybean	mitochondrion	65.96	66.43
EES00619	Sorghum	mitochondrion	68.44	66.1
KRH43653	Soybean	mitochondrion	65.6	66.07
Bra024320.1-P	Field mustard	mitochondrion, plastid	65.6	65.84
CDY08860	Canola	mitochondrion, plastid	65.6	65.84
CDX81240	Canola	mitochondrion, plastid	65.6	65.84
GSMUA_Achr11P...	Banana	mitochondrion	68.44	65.65
CDX84541	Canola	mitochondrion, plastid	65.25	65.48
Os08t0310100-01	Rice	nucleus	67.38	64.41
Bra037788.1-P	Field mustard	mitochondrion, plastid	63.48	64.39
TraesCS3A01G268300.1	Wheat	mitochondrion	66.31	63.61
TraesCS3B01G302700.1	Wheat	mitochondrion	66.31	62.96
TraesCS3D01G268400.1	Wheat	mitochondrion	66.31	62.96
HORVU3Hr1G062510.1	Barley	plastid	64.89	55.96
HORVU4Hr1G078100.1	Barley	plastid	20.92	45.74
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	24.11	41.72
Solyc05g009370.2.1	Tomato	plastid	22.7	23.62

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	UniProt:K4BA01	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	PANTHER:PTHR12934
PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	EnsemblPlantsGene:Solyc02g081310.2
EnsemblPlants:Solyc02g081310.2.1	TIGRFAMs:TIGR01071	UniParc:UPI0002767780	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:45323170..45326859

Molecular Weight (calculated)

30790.8 Da

IEP (calculated)

11.742

GRAVY (calculated)

-0.465

Length

282 amino acids

Sequence
(BLAST)

001: MLRRRITSLL SSSSLQNVPI YGEPIKISQP IFTSSQKLPL LQFSQRPISS IGSLGCQFRR AYSLLSLNDL QDNKGARKQK TRKGRGIGSG KGKTAGRGHK
101: GQKARGTYKF GFEGGQTPLR RRVPKRGFKN PFSLTFQPVG LGKIANLINA GKIDSSELIT MKTLKDSGAI GKQIEDGARL MGRGAELIQW PIHLEVSRVT
201: ARAKAAVEAA GGSVRRVHYN KLGLRALLKP EWFEKKGRLL PRPARPPPKL KDKVDSIGRL PAPTKPLPFV VEEAESVSAA PA

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.