CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84541	Canola	mitochondrion, plastid	97.51	97.51
Bra024320.1-P	Field mustard	mitochondrion, plastid	95.37	95.37
CDX81240	Canola	mitochondrion, plastid	89.32	89.32
CDY18700	Canola	mitochondrion, plastid	86.48	87.41
AT5G64670.1	Thale cress	mitochondrion, plastid	85.05	85.05
KRH13508	Soybean	cytosol	27.4	74.76
VIT_13s0019g04930.t01	Wine grape	mitochondrion	69.39	68.9
Solyc02g081310.2.1	Tomato	plastid	65.84	65.6
PGSC0003DMT400043119	Potato	mitochondrion, plastid	65.84	65.6
KRH43653	Soybean	mitochondrion	65.12	65.36
KRH13797	Soybean	mitochondrion	64.77	65.0
Zm00001d040588_P004	Maize	mitochondrion	63.7	62.37
GSMUA_Achr11P...	Banana	mitochondrion	64.41	61.56
EES00619	Sorghum	mitochondrion	63.7	61.3
Os08t0310100-01	Rice	nucleus	64.06	61.02
TraesCS3A01G268300.1	Wheat	mitochondrion	61.92	59.18
TraesCS3D01G268400.1	Wheat	mitochondrion	61.57	58.25
TraesCS3B01G302700.1	Wheat	mitochondrion	61.21	57.91
HORVU3Hr1G062510.1	Barley	plastid	62.63	53.82
HORVU4Hr1G078100.1	Barley	plastid	20.28	44.19
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	23.84	41.1
CDY13600	Canola	plastid	23.84	24.72
CDY70691	Canola	plastid	23.49	23.57
CDX83573	Canola	plastid	22.42	22.66
CDY04186	Canola	plastid	22.42	22.58

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	GO:A0A078F2W6	UniProt:A0A078F2W6	EnsemblPlants:CDY08860	ProteinID:CDY08860
ProteinID:CDY08860.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00000832001	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type
InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0004EEF958	SEG:seg	:

Description

BnaA06g23640DBnaA06g23640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2W6]

Coordinates

chrLK031989:+:933335..935998

Molecular Weight (calculated)

31079.2 Da

IEP (calculated)

11.595

GRAVY (calculated)

-0.489

Length

281 amino acids

Sequence
(BLAST)

001: MIRRRISSII SASLFNSSIH HSANPRFIVS SPLLQCCRSP ILTQVPSFPG GVSSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKHINAGQ IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADEIKWPL HLEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD RVDSIGRLPA PKKPIPFYAA EESKVESPVE S

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.