CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	CDX70151	AT5G05410.1	18552202
AT3G25920.1	CDX98843	AT5G05410.1	18552202
AT3G25920.1	CDY04950	AT5G05410.1	18552202
AT3G25920.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13600	Canola	plastid	87.41	89.67
CDY70691	Canola	plastid	88.13	87.5
CDY04186	Canola	plastid	84.89	84.59
AT3G25920.1	Thale cress	plastid	83.09	83.39
KRG90820	Soybean	plastid	62.23	67.58
Solyc05g009370.2.1	Tomato	plastid	64.39	66.05
VIT_01s0011g03590.t01	Wine grape	plastid	60.79	64.5
PGSC0003DMT400037705	Potato	plastid	62.59	63.04
GSMUA_Achr1P22410_001	Banana	mitochondrion	44.96	60.68
KRH35950	Soybean	cytosol	38.85	58.38
TraesCS4B01G242800.1	Wheat	plastid	53.24	56.06
TraesCS4D01G242400.1	Wheat	plastid	53.24	55.85
TraesCS4A01G065400.1	Wheat	plastid	53.24	55.85
Os03t0219900-01	Rice	plastid	52.16	55.13
Zm00001d028240_P001	Maize	plastid	52.88	55.06
EER95259	Sorghum	plastid	52.52	54.28
CDY18700	Canola	mitochondrion, plastid	23.38	23.38
CDX84541	Canola	mitochondrion, plastid	23.38	23.13
CDX81240	Canola	mitochondrion, plastid	23.02	22.78
CDY08860	Canola	mitochondrion, plastid	22.66	22.42

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:A0A078D8F5	EnsemblPlants:CDX83573	ProteinID:CDX83573	ProteinID:CDX83573.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00139226001	InterPro:L18e/L15P_sf	HAMAP:MF_01341
PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS
InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0004EEE08B	SEG:seg

Description

BnaC07g23130D

Coordinates

chrLK031833:-:772400..773684

Molecular Weight (calculated)

29829.2 Da

IEP (calculated)

11.380

GRAVY (calculated)

-0.454

Length

278 amino acids

Sequence
(BLAST)

001: MAVPLSVSTN PLISRQCHRP YFPFTSFKGN LSVLGSNPCQ ILSLKLHLKR QTGKQQARPL VVFNQTSSSS SSPEAVVGSE RFRLDNLGPQ PGSRKRAKRK
101: GRGISAGQGA SCGFGMRGQK SRSGPGIMRG FEGGQTALYR RLPKLRGIAG GMRSGLPKYV PVNLKDIETA GFEDGDEVSL ETLKQKGLIN PSGRERKLPL
201: KILGTGELSV KLTFKARAFS TSAKEKLKAS GCTLTVLPGR KKWVKPSVAK NLARADEYFA KKRAAAAETA ASEPATSA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.