Factsheet for TraesCS4A01G065400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT3G25920.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT3G25920.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G242400.1	Wheat	plastid	98.87	98.87
TraesCS4B01G242800.1	Wheat	plastid	91.7	92.05
Os03t0219900-01	Rice	plastid	78.11	78.71
EER95259	Sorghum	plastid	76.98	75.84
Zm00001d028240_P001	Maize	plastid	76.23	75.66
VIT_01s0011g03590.t01	Wine grape	plastid	58.11	58.78
KRG90820	Soybean	plastid	56.23	58.2
Solyc05g009370.2.1	Tomato	plastid	59.25	57.93
GSMUA_Achr1P22410_001	Banana	mitochondrion	44.53	57.28
PGSC0003DMT400037705	Potato	plastid	59.25	56.88
Bra017341.1-P	Field mustard	plastid	58.49	55.36
CDY04186	Canola	plastid	58.11	55.2
CDY70691	Canola	plastid	58.11	55.0
AT3G25920.1	Thale cress	plastid	57.36	54.87
CDY13600	Canola	plastid	55.85	54.61
Bra025174.1-P	Field mustard	plastid	55.47	54.44
CDX83573	Canola	plastid	55.85	53.24
KRH35950	Soybean	cytosol	36.98	52.97
TraesCS3A01G268300.1	Wheat	mitochondrion	24.53	22.11

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719
GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	SignalP:SignalP-noTM	TIGRFAMs:TIGR01071
EnsemblPlantsGene:TraesCS4A01G065400	EnsemblPlants:TraesCS4A01G065400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:62551668..62553999

Molecular Weight (calculated)

28160.3 Da

IEP (calculated)

11.251

GRAVY (calculated)

-0.332

Length

265 amino acids

Sequence
(BLAST)

001: MASITLLSLA PAATFLHLPA STASSSPHFA AIPRSLAGRR ALLLSARAPR RVTVVCSAAA AAEASEAEPV EKFRLDNLSP QKGARRKPKR KGRGISAGQG
101: ASCGFGMRGQ KSRSGPGVRR GFEGGQMPLY RRLPKLRGIA GGMHIGLPKY VPFNLRDIVQ GGFKDGDEIS LESLKSRGLI NPSGRERKLP LKILGDGDLS
201: VKLNIKAGAF SSAAKEKLEA AGCTLTVLPK RKKWLPAAYV KNQARAEEYF SKKKGGAVES DEATT

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.