Factsheet for Bra025174.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G25920.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G25920.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13600	Canola	plastid	97.78	97.42
Bra017341.1-P	Field mustard	plastid	87.04	83.93
AT3G25920.1	Thale cress	plastid	84.07	81.95
KRG90820	Soybean	plastid	63.7	67.19
Solyc05g009370.2.1	Tomato	plastid	66.67	66.42
VIT_01s0011g03590.t01	Wine grape	plastid	62.96	64.89
PGSC0003DMT400037705	Potato	plastid	64.44	63.04
GSMUA_Achr1P22410_001	Banana	mitochondrion	46.67	61.16
KRH35950	Soybean	cytosol	40.37	58.92
Zm00001d028240_P001	Maize	plastid	55.19	55.81
TraesCS4B01G242800.1	Wheat	plastid	54.44	55.68
TraesCS4A01G065400.1	Wheat	plastid	54.44	55.47
TraesCS4D01G242400.1	Wheat	plastid	54.07	55.09
EER95259	Sorghum	plastid	54.81	55.02
Os03t0219900-01	Rice	plastid	53.33	54.75
Bra024320.1-P	Field mustard	mitochondrion, plastid	24.44	23.49
Bra037788.1-P	Field mustard	mitochondrion, plastid	23.33	22.66

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	EnsemblPlantsGene:Bra025174	EnsemblPlants:Bra025174.1	EnsemblPlants:Bra025174.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:L18e/L15P_sf	UniProt:M4E8R8	HAMAP:MF_01341
PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS
InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI000253F713	SEG:seg

Description

AT3G25920 (E=5e-106) RPL15 | RPL15; structural constituent of ribosome

Coordinates

chrA06:+:22947404..22948504

Molecular Weight (calculated)

28855.1 Da

IEP (calculated)

11.348

GRAVY (calculated)

-0.428

Length

270 amino acids

Sequence
(BLAST)

001: MAVPLPLSVS TNPLISRHCH RLYSPSTSFK GNVSVLGANP CHILSLKLHL KRRSGPLLVF NQTSSSSSPG SERFRLDNLG PQPGSRKRAK RKGRGISAGQ
101: GASCGFGMRG QKSRSGPGIM RGFEGGQTAL YRRLPKLRGI AGGMRSGLPK YVPVNLKDIE TAGFEDGDEV SLETLKQKGL INPSGRERKL PLKILGTGEL
201: SVKLTFKARA FSTSAKEKLE ASGCTLTVLP GRKKWVKPSV AKNLARADEY FAKKRAAAAE TAASEPATSA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.