CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25920.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028240_P001	Maize	plastid	93.68	94.38
TraesCS4B01G242800.1	Wheat	plastid	78.07	79.55
Os03t0219900-01	Rice	plastid	77.7	79.47
TraesCS4D01G242400.1	Wheat	plastid	75.84	76.98
TraesCS4A01G065400.1	Wheat	plastid	75.84	76.98
KRG90820	Soybean	plastid	56.51	59.38
VIT_01s0011g03590.t01	Wine grape	plastid	56.88	58.4
Solyc05g009370.2.1	Tomato	plastid	57.62	57.2
GSMUA_Achr1P22410_001	Banana	mitochondrion	43.12	56.31
PGSC0003DMT400037705	Potato	plastid	57.25	55.8
CDY04186	Canola	plastid	57.25	55.2
Bra017341.1-P	Field mustard	plastid	57.25	55.0
CDY13600	Canola	plastid	55.39	54.98
Bra025174.1-P	Field mustard	plastid	55.02	54.81
KRH35950	Soybean	cytosol	37.55	54.59
CDY70691	Canola	plastid	56.13	53.93
AT3G25920.1	Thale cress	plastid	54.28	52.71
CDX83573	Canola	plastid	54.28	52.52
EES00619	Sorghum	mitochondrion	24.16	22.26

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	EntrezGene:8056875	UniProt:C5WSP9	EnsemblPlants:EER95259	ProteinID:EER95259
ProteinID:EER95259.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	EnsemblPlantsGene:SORBI_3001G453300	SUPFAM:SSF52080	unigene:Sbi.7452
TIGRFAMs:TIGR01071	UniParc:UPI0001A8338C	RefSeq:XP_002468261.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:72982783..72985131

Molecular Weight (calculated)

28403.7 Da

IEP (calculated)

11.549

GRAVY (calculated)

-0.329

Length

269 amino acids

Sequence
(BLAST)

001: MASITLLSLA PTATFLHIPA STSSSPFVAA PGILAGRRAA SRALPLRARP PRRITVVCSA AAAAAEASDA AAPVEKFRLD NLGPQKGSRR RPKRKGRGIA
101: AGQGASCGFG MRGQKSRSGP GVRRGFEGGQ MPLYRRLPKL RGIAGGMHIG LPKYVAFNLK DIVRGGFKDG DEISLETLKS RGLINPSGRE RKLPLKILGD
201: GDVSVKLNIK AGAFSASAKE KLEAAGCSLT LLPKRKKWLS QNYLKNQARA EEYFAKKKGG AGESDSGTV

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.