Factsheet for VIT_01s0011g03590.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037705	Potato	plastid	74.05	70.29
Solyc05g009370.2.1	Tomato	plastid	69.85	67.53
KRG90820	Soybean	plastid	63.36	64.84
GSMUA_Achr1P22410_001	Banana	mitochondrion	49.62	63.11
Bra025174.1-P	Field mustard	plastid	64.89	62.96
CDY13600	Canola	plastid	64.5	62.36
AT3G25920.1	Thale cress	plastid	65.27	61.73
Bra017341.1-P	Field mustard	plastid	65.27	61.07
CDY70691	Canola	plastid	65.27	61.07
CDX83573	Canola	plastid	64.5	60.79
KRH35950	Soybean	cytosol	42.75	60.54
CDY04186	Canola	plastid	64.12	60.22
Zm00001d028240_P001	Maize	plastid	59.54	58.43
TraesCS4A01G065400.1	Wheat	plastid	58.78	58.11
TraesCS4B01G242800.1	Wheat	plastid	58.4	57.95
TraesCS4D01G242400.1	Wheat	plastid	58.4	57.74
Os03t0219900-01	Rice	plastid	57.25	57.03
EER95259	Sorghum	plastid	58.4	56.88
VIT_13s0019g04930.t01	Wine grape	mitochondrion	25.19	23.32

Protein Annotations

EntrezGene:100268043	wikigene:100268043	MapMan:17.7.2.1.13	Gene3D:3.100.10.10	ProteinID:CBI27014	ProteinID:CBI27014.3
UniProt:D7T943	EMBL:FN595752	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719
GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
InterPro:L18e/L15P_sf	EntrezGene:LOC100268043	wikigene:LOC100268043	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475
PANTHER:PTHR12934	PANTHER:PTHR12934:SF11	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	TIGR:TC55143	TIGRFAMs:TIGR01071	UniParc:UPI00015C7F3C	ArrayExpress:VIT_01s0011g03590	EnsemblPlantsGene:VIT_01s0011g03590
EnsemblPlants:VIT_01s0011g03590.t01	unigene:Vvi.5097	RefSeq:XP_002279311	RefSeq:XP_002279311.2	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:3246882..3249663

Molecular Weight (calculated)

28056.4 Da

IEP (calculated)

11.365

GRAVY (calculated)

-0.420

Length

262 amino acids

Sequence
(BLAST)

001: MAALLSVSSA PSSRTPLFLH HPSSPFKGNV RNLKANPCQF LTIKLEVKEK VRKSGVVVAS QGSPSSVVDN VRFRLDNLGP QPGSRKKAKR KGRGISAGQG
101: NSCGFGMRGQ KSRSGPGVMK GFEGGQMPLY RRIPKLRGIA GGMHAGLPKY VPVNLKDIEA AGFQEGEEVS LDSLKKKGLI NPSGRERRLP LKILGAGDLS
201: VKLNIKARAF SSSAKEKLEA AGCSITVLPG RKKWLKPSVI KNLARAEEYF AKKRAAAEQA SS

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.