Factsheet for VIT_13s0019g04930.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13508	Soybean	cytosol	28.62	78.64
AT5G64670.1	Thale cress	mitochondrion, plastid	73.14	73.67
CDY18700	Canola	mitochondrion, plastid	71.02	72.3
CDX81240	Canola	mitochondrion, plastid	71.73	72.24
Bra024320.1-P	Field mustard	mitochondrion, plastid	71.02	71.53
Bra037788.1-P	Field mustard	mitochondrion, plastid	69.26	70.5
CDX84541	Canola	mitochondrion, plastid	69.61	70.11
CDY08860	Canola	mitochondrion, plastid	68.9	69.39
PGSC0003DMT400043119	Potato	mitochondrion, plastid	68.9	69.15
Solyc02g081310.2.1	Tomato	plastid	68.2	68.44
KRH43653	Soybean	mitochondrion	66.78	67.5
KRH13797	Soybean	mitochondrion	66.43	67.14
EES00619	Sorghum	mitochondrion	69.26	67.12
Zm00001d040588_P004	Maize	mitochondrion	67.49	66.55
Os08t0310100-01	Rice	nucleus	67.84	65.08
GSMUA_Achr11P...	Banana	mitochondrion	65.72	63.27
TraesCS3A01G268300.1	Wheat	mitochondrion	65.37	62.93
TraesCS3D01G268400.1	Wheat	mitochondrion	65.37	62.29
TraesCS3B01G302700.1	Wheat	mitochondrion	64.66	61.62
HORVU3Hr1G062510.1	Barley	plastid	66.78	57.8
HORVU4Hr1G078100.1	Barley	plastid	20.14	44.19
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	24.73	42.94
VIT_01s0011g03590.t01	Wine grape	plastid	23.32	25.19

Protein Annotations

EntrezGene:100251266	wikigene:100251266	MapMan:17.7.1.1.13	Gene3D:3.100.10.10	ProteinID:CBI31411	ProteinID:CBI31411.3
UniProt:D7TM44	EMBL:FN595998	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:L18e/L15P_sf	EntrezGene:LOC100251266	wikigene:LOC100251266	HAMAP:MF_01341	PFAM:PF00828
PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080
TIGR:TC70366	TIGRFAMs:TIGR01071	UniParc:UPI00015C9862	ArrayExpress:VIT_13s0019g04930	EnsemblPlantsGene:VIT_13s0019g04930	EnsemblPlants:VIT_13s0019g04930.t01
unigene:Vvi.19557	RefSeq:XP_002268646	RefSeq:XP_002268646.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:6623647..6626756

Molecular Weight (calculated)

31088.4 Da

IEP (calculated)

11.647

GRAVY (calculated)

-0.462

Length

283 amino acids

Sequence
(BLAST)

001: MLRRRLPSLL STSLFNASPI VSSKCVGTKF PLSSPFLPLH SLQCANPSPT LKGIWAVDRV RAYSLLSLND LRDNKGARKQ KKRKGRGIGS GLGKTAGRGH
101: KGQKARGTMK FGFEGGQTPL RRRMPKRGFK NPFSLTFQPV GLGKIAKLIN AGKIDSSELI TMKTLKDAGA IGKQIKDGVR LMGRGADEIK WPIHFEVSRV
201: TVRAKEAVEA AGGSVRRVYY NKLGFQALLK PEWFEKKGRL LPKAARPPPK QRDKVDSIGR LPAPTKPIPF LPEEKEAAFT PSV

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.