CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08860	Canola	mitochondrion, plastid	97.51	97.51
Bra024320.1-P	Field mustard	mitochondrion, plastid	95.02	95.02
CDX81240	Canola	mitochondrion, plastid	90.39	90.39
CDY18700	Canola	mitochondrion, plastid	87.19	88.13
AT5G64670.1	Thale cress	mitochondrion, plastid	85.77	85.77
KRH13508	Soybean	cytosol	27.05	73.79
VIT_13s0019g04930.t01	Wine grape	mitochondrion	70.11	69.61
Solyc02g081310.2.1	Tomato	plastid	65.48	65.25
PGSC0003DMT400043119	Potato	mitochondrion, plastid	65.48	65.25
KRH43653	Soybean	mitochondrion	64.41	64.64
KRH13797	Soybean	mitochondrion	64.06	64.29
Zm00001d040588_P004	Maize	mitochondrion	62.99	61.67
GSMUA_Achr11P...	Banana	mitochondrion	64.41	61.56
EES00619	Sorghum	mitochondrion	63.7	61.3
Os08t0310100-01	Rice	nucleus	64.06	61.02
TraesCS3A01G268300.1	Wheat	mitochondrion	61.57	58.84
TraesCS3D01G268400.1	Wheat	mitochondrion	61.21	57.91
TraesCS3B01G302700.1	Wheat	mitochondrion	60.85	57.58
HORVU3Hr1G062510.1	Barley	plastid	62.63	53.82
HORVU4Hr1G078100.1	Barley	plastid	19.93	43.41
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	24.2	41.72
CDY13600	Canola	plastid	24.56	25.46
CDY70691	Canola	plastid	24.2	24.29
CDX83573	Canola	plastid	23.13	23.38
CDY04186	Canola	plastid	22.78	22.94

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	GO:A0A078D5G5	EnsemblPlants:CDX84541	ProteinID:CDX84541	ProteinID:CDX84541.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00141784001	InterPro:L18e/L15P_sf	HAMAP:MF_01341
PFAM:PF00828	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0004EDB86B	SEG:seg	:	:

Description

BnaC03g49590D

Coordinates

chrLK031837:-:1764722..1766156

Molecular Weight (calculated)

31100.2 Da

IEP (calculated)

11.798

GRAVY (calculated)

-0.491

Length

281 amino acids

Sequence
(BLAST)

001: MIRRRISSII STSLFNSSIH HSAKPRFIVS SPLLQCRRSP ILTQVPSFPG GVSSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFNNKF KLHFQPVGLG KIAKLINAGQ IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADEIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD RVDSIGRLPA PKKPIPFYAA EESKVESPVG S

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.