Factsheet for Zm00001d040588_P004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00619	Sorghum	mitochondrion	86.06	84.59
Os08t0310100-01	Rice	nucleus	83.62	81.36
TraesCS3A01G268300.1	Wheat	mitochondrion	78.05	76.19
TraesCS3D01G268400.1	Wheat	mitochondrion	78.4	75.76
TraesCS3B01G302700.1	Wheat	mitochondrion	78.4	75.76
KRH13508	Soybean	cytosol	26.83	74.76
Solyc02g081310.2.1	Tomato	plastid	67.6	68.79
PGSC0003DMT400043119	Potato	mitochondrion, plastid	67.25	68.44
VIT_13s0019g04930.t01	Wine grape	mitochondrion	66.55	67.49
KRH43653	Soybean	mitochondrion	64.11	65.71
GSMUA_Achr11P...	Banana	mitochondrion	67.25	65.65
HORVU3Hr1G062510.1	Barley	plastid	74.56	65.44
KRH13797	Soybean	mitochondrion	63.76	65.36
CDY18700	Canola	mitochondrion, plastid	62.02	64.03
Bra024320.1-P	Field mustard	mitochondrion, plastid	62.37	63.7
CDY08860	Canola	mitochondrion, plastid	62.37	63.7
AT5G64670.1	Thale cress	mitochondrion, plastid	62.02	63.35
CDX84541	Canola	mitochondrion, plastid	61.67	62.99
CDX81240	Canola	mitochondrion, plastid	61.67	62.99
Bra037788.1-P	Field mustard	mitochondrion, plastid	59.93	61.87
HORVU4Hr1G078100.1	Barley	plastid	24.39	54.26
HORVU5Hr1G041420.1	Barley	endoplasmic reticulum	26.13	46.01
Zm00001d028240_P001	Maize	plastid	23.69	25.47

Protein Annotations

MapMan:17.7.1.1.13	Gene3D:3.100.10.10	UniProt:A0A1D6MRK4	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
InterPro:L18e/L15P_sf	HAMAP:MF_01341	ProteinID:ONM31611.1	PFAM:PF00828	PANTHER:PTHR12934	PANTHER:PTHR12934:SF12
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGRFAMs:TIGR01071	UniParc:UPI0008457197
EnsemblPlantsGene:Zm00001d040588	EnsemblPlants:Zm00001d040588_P004	EnsemblPlants:Zm00001d040588_T004	SEG:seg	:	:

Description

Ribosomal protein L18e/L15 superfamily protein

Coordinates

chr3:+:51611355..51616382

Molecular Weight (calculated)

31074.2 Da

IEP (calculated)

12.091

GRAVY (calculated)

-0.447

Length

287 amino acids

Sequence
(BLAST)

001: MWRRASHLLI RTAAAAAAPT RRLPLPHPPL PIAPRVASAS SSYATAVAAR APRTVGTLLR LNDLCDNPGA RKQKTRKGRG IGSGKGKTAG RGHKGQKARG
101: TARFGFEGGQ TPLRRRLPRR GFKNPFSLTF QARPISAPCG LGKIAKLINA GKIDSSELIT MKTLKETGAI GKQIKDGIRL MGRGAEEIKW PIHLEVSRAT
201: ARAKAAVEAA GGTVRLVYYN KLGFRALLKP EWFEKKGRLL PKAARPPPKQ RDKVDSIGRL PAPTKPLPFT VEELEFAAQR EAARVTA

Best Arabidopsis Sequence Match ( AT5G64670.1 )
(BLAST)

001: MLRRRLLSII STSLINSSFH QTAKPRFIIS SPLLQCRPSP ISTQIPTSTS RALSFQGIRA YSLLSLNDLR DNVPRKLKTR KGRGIGSGKG KTAGRGHKGQ
101: KARGTMKFGF EGGQTPLRRR LPKRGFKNKF KLHFQPVGLG KIAKLINAGK IDSHELITMK TLKDVGAIGK QIEDGVRLMG RGADDIKWPL HFEVSRVTVR
201: AKEVVEAAGG SVRRVYYNKL GLRALLKPEW FEKKGRLLPK AARPPPKQQD KVDSIGRLPA PKKPIPFFAA EETKVESPVE S

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.