Factsheet for Os03t0219900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 19621931
plastid: 21433289
extracellular: 25047395
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028240_P001	Maize	plastid	79.85	78.65
TraesCS4D01G242400.1	Wheat	plastid	78.71	78.11
TraesCS4A01G065400.1	Wheat	plastid	78.71	78.11
EER95259	Sorghum	plastid	79.47	77.7
TraesCS4B01G242800.1	Wheat	plastid	76.81	76.52
KRG90820	Soybean	plastid	57.03	58.59
VIT_01s0011g03590.t01	Wine grape	plastid	57.03	57.25
Solyc05g009370.2.1	Tomato	plastid	57.79	56.09
PGSC0003DMT400037705	Potato	plastid	58.17	55.43
GSMUA_Achr1P22410_001	Banana	mitochondrion	43.35	55.34
CDY04186	Canola	plastid	57.41	54.12
KRH35950	Soybean	cytosol	38.02	54.05
Bra025174.1-P	Field mustard	plastid	54.75	53.33
Bra017341.1-P	Field mustard	plastid	56.65	53.21
CDY70691	Canola	plastid	56.27	52.86
CDY13600	Canola	plastid	54.37	52.77
AT3G25920.1	Thale cress	plastid	55.13	52.35
CDX83573	Canola	plastid	55.13	52.16
Os08t0310100-01	Rice	nucleus	23.95	21.36

Protein Annotations

MapMan:17.7.2.1.13	Gene3D:3.100.10.10	EntrezGene:4332089	ProteinID:ABF94685.1	ProteinID:BAF11319.1	ProteinID:BAS83008.1
ProteinID:EAZ26092.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009719	GO:GO:0009735
GO:GO:0009941	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:L18e/L15P_sf	HAMAP:MF_01341
EnsemblPlantsGene:Os03g0219900	EnsemblPlants:Os03t0219900-01	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR12934	PANTHER:PTHR12934:SF11
UniProt:Q10PV6	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L15_bac-type	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080
SignalP:SignalP-noTM	TIGRFAMs:TIGR01071	UniParc:UPI0000DB48E6	RefSeq:XP_015631945.1	RefSeq:XP_015631946.1	RefSeq:XP_015631947.1
SEG:seg	:	:	:	:	:

Description

Similar to 50S ribosomal protein L15, chloroplast precursor (CL15) (Fragment). (Os03t0219900-01)

Coordinates

chr3:+:6295480..6297596

Molecular Weight (calculated)

27878.9 Da

IEP (calculated)

11.280

GRAVY (calculated)

-0.379

Length

263 amino acids

Sequence
(BLAST)

001: MASITLLSLA PAATLLHLPA STSLSTSFVA APGPISGRRS VVLRARPRRC VTVVCSAAAA EAAEAEPAEK FRLDNLGPQK GSRRRPKRKG RGIAAGQGAS
101: CGFGMRGQKS RSGPGVRRGF EGGQMPLYRR IPKLRGIAGG MHIGLPKYVP FNLRDLARGG FKDGDEISLE SLKSRGLINP SGRERKLPLK ILGDGDVSVK
201: LNIKAGAFSA SAKEKLEAAG CTLSLVPKRK KWLPQSYLKN QARAEEYFSK KNGGAGESDE ASA

Best Arabidopsis Sequence Match ( AT3G25920.1 )
(BLAST)

001: MATPLSISSN PLTSRHCYRL HLSSTSFKGN VSVLGANPSQ ILSLKLNQTL KTRNQQQFAR PLVVVSQTAA TSSAVVAPER FRLDNLGPQP GSRKKQKRKG
101: RGISAGQGAS CGFGMRGQKS RSGPGIMRGF EGGQTALYRR LPKLRGIAGG MRSGLPKYLP VNIKDIETAG FQEGDEVSLE TLKQKGLINP SGRERKLPLK
201: ILGTGELSMK LTFKARAFST QAKEKLEASG CTLTVLPGRK KWVKPSVAKN QARADEYFAK KRAAAAEAAT SEPAASA

Arabidopsis Description

RPL1550S ribosomal protein L15, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25873]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.