CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	CDX70151	AT5G05410.1	18552202
AT1G53280.1	CDX98843	AT5G05410.1	18552202
AT1G53280.1	CDY04950	AT5G05410.1	18552202
AT1G53280.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24104	Canola	cytosol	85.51	93.13
CDY02515	Canola	plastid	89.95	89.95
AT1G53280.1	Thale cress	plastid	85.75	83.79
CDX98521	Canola	cytosol	71.96	78.57
CDX95299	Canola	cytosol	71.5	78.26
CDX97625	Canola	cytosol	71.26	77.81
CDY23161	Canola	cytosol	70.56	77.24
CDX75800	Canola	cytosol, golgi, mitochondrion	69.86	76.28
CDX82455	Canola	cytosol, golgi, mitochondrion	69.86	76.28
CDY25999	Canola	golgi, plastid	87.15	75.51
GSMUA_Achr8P19930_001	Banana	cytosol	60.05	68.72
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	61.92	67.77
Solyc07g062610.2.1	Tomato	plastid	60.98	66.75
Os06t0531200-01	Rice	plastid	60.05	65.23
KRH27320	Soybean	nucleus	62.15	61.15
KRH21993	Soybean	endoplasmic reticulum, nucleus	62.38	61.1
OQU86107	Sorghum	cytosol	44.16	59.62
EER89866	Sorghum	plastid	60.51	58.47
TraesCS7A01G349100.1	Wheat	plastid	59.35	58.39
TraesCS7D01G329500.1	Wheat	golgi, plastid	59.11	58.16
Zm00001d046135_P001	Maize	plastid	59.11	57.89
TraesCS3B01G162300.1	Wheat	mitochondrion	54.91	55.29
TraesCS3D01G144800.1	Wheat	mitochondrion	54.67	54.93
Zm00001d039363_P001	Maize	mitochondrion	54.44	54.44
TraesCS7B01G233600.2	Wheat	mitochondrion	59.11	54.06
TraesCS3A01G142800.1	Wheat	mitochondrion	53.5	53.88
Os01t0217800-01	Rice	mitochondrion	53.5	53.5
TraesCS1D01G007700.1	Wheat	cytosol	50.93	47.29
Os01t0217500-01	Rice	cytosol	41.82	45.32
TraesCS3D01G144900.1	Wheat	cytosol	40.19	43.65
TraesCS3A01G142700.1	Wheat	cytosol	39.72	42.93
OQU86110	Sorghum	extracellular, plasma membrane	38.32	38.5
CDY49268	Canola	plastid	27.57	37.82
CDX69022	Canola	plastid	40.19	37.39
CDY68228	Canola	plastid	39.25	36.52
VIT_15s0024g01260.t01	Wine grape	cytosol	18.22	32.37
HORVU3Hr1G049070.10	Barley	cytosol, nucleus, plasma membrane	8.18	17.07

Protein Annotations

EnsemblPlants:CDY59398	EnsemblPlantsGene:GSBRNA2T00026041001	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI
InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965	ProteinID:CDY59398	ProteinID:CDY59398.1
SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI0004EEC0AB	UniProt:A0A078J7L9	MapMan:35.1

Description

BnaC03g78170DBnaC03g78170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7L9]

Coordinates

chrLK033759:+:35541..38106

Molecular Weight (calculated)

45654.5 Da

IEP (calculated)

7.419

GRAVY (calculated)

0.081

Length

428 amino acids

Sequence
(BLAST)

001: MAFHCINPIT ATRFSSTRLH RSTSRRTSRS FSVSATMASP AKRVLIPVAH GTEPFEAVVM IDVLRRGGAD VTVASVENQV GVGACHGIKI VADALLSDVN
101: DSVFDLIMLP GGLPGGETLK NCKPLENMVK KQDADGRLNA AICCSPALAL ATWGLLEGKK ATCYPVFMEK LGVTCGKAVE SRVEVDGRIV TSRGPGTTME
201: FSVTLVEQLF GKEKAAEVSA PLVMRPNPGD EYTITELNQM NWSFDSTPQI LVPIADGSEE MEAVAIIDFL RRAKANVVVA ALGNSLEVVA SRKVKLVADV
301: LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCNKLSDQ SHIEHRVLVD GNLITSRGPG
401: TSLEFALAIV EKFYGREKGL QLAKATLV

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.