Factsheet for TraesCS3A01G142800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G53280.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G53280.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G162300.1	Wheat	mitochondrion	97.18	97.18
TraesCS3D01G144800.1	Wheat	mitochondrion	96.94	96.71
OQU86107	Sorghum	cytosol	65.18	87.38
Zm00001d039363_P001	Maize	mitochondrion	83.76	83.18
Os01t0217800-01	Rice	mitochondrion	82.35	81.78
HORVU3Hr1G027610.6	Barley	cytosol, mitochondrion, plastid	74.12	68.48
GSMUA_Achr8P19930_001	Banana	cytosol	55.76	63.37
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	53.18	57.8
Solyc07g062610.2.1	Tomato	plastid	52.94	57.54
Bra039666.1-P	Field mustard	cytosol	52.71	57.0
CDY24104	Canola	cytosol	52.47	56.74
TraesCS7A01G349100.1	Wheat	plastid	56.24	54.94
VIT_19s0014g01520.t01	Wine grape	plastid	55.06	54.55
KRH27320	Soybean	nucleus	55.29	54.02
CDX95299	Canola	cytosol	49.65	53.96
KRH21993	Soybean	endoplasmic reticulum, nucleus	55.29	53.78
AT3G14990.1	Thale cress	cytosol	49.41	53.57
CDY59398	Canola	plastid	53.88	53.5
Bra027286.1-P	Field mustard	cytosol	49.18	53.32
CDX97625	Canola	cytosol	49.18	53.32
CDY02515	Canola	plastid	53.65	53.27
Bra030947.1-P	Field mustard	plastid	53.65	53.27
CDX98521	Canola	cytosol	48.94	53.06
Bra033480.1-P	Field mustard	cytosol	48.71	52.94
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	48.71	52.81
CDX82455	Canola	cytosol, golgi, mitochondrion	48.71	52.81
CDX75800	Canola	cytosol, golgi, mitochondrion	48.71	52.81
CDY23161	Canola	cytosol	48.47	52.69
AT1G53280.1	Thale cress	plastid	53.18	51.6
TraesCS3A01G142700.1	Wheat	cytosol	45.18	48.48
CDY25999	Canola	golgi, plastid	52.94	45.55
TraesCS7A01G334600.1	Wheat	plastid	41.65	39.6
TraesCS4A01G376600.1	Wheat	plastid	41.88	39.56
TraesCS7A01G334700.1	Wheat	plastid	37.41	39.07
TraesCS7A01G078400.1	Wheat	plastid	41.41	38.94
VIT_15s0024g01260.t01	Wine grape	cytosol	16.94	29.88

Protein Annotations

EnsemblPlants:TraesCS3A01G142800.1	EnsemblPlantsGene:TraesCS3A01G142800	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1	InterPro:DJ-1/PfpI
InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF9	PFAM:PF01965	SEG:seg	SUPFAM:SSF52317
TIGR:cd03135	TIGRFAMs:TIGR01383	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3A:+:123278326..123281451

Molecular Weight (calculated)

44941.8 Da

IEP (calculated)

7.193

GRAVY (calculated)

0.208

Length

425 amino acids

Sequence
(BLAST)

001: MAAAVSSLAR RAVSCRRLLL SRAFAAAARP AKRVLVPVAA GTEPVEAAAT ADVLNRAGAR VTVATVASAP AGDEGLLVEA AYGVKLVAGG RVADLEGEAF
101: DLIALPGGMP GSVNLRECKV LERMVKMHAE KGGLYGAICA APAVTLAHWG MLKGLKATCY PSFMEKFTAE VIPVNSRVVV DRNVVTSQGP GTAIEFALAL
201: VEQLYDKEKM EEVAGPLYVH PQHGADYTIE ELNSVEWKCS GTPQVLVPVA NGSEEIEALN LIDVLRRAGA NVTVASVEDT LQIVTRRHKF NLIADMMLDE
301: AAKMEFDLIV MPGGLSGAQK FASTDKLVDL LKKQAGSGKA YGAICASPAH VLEPHGLLKG KKATAFPPMA HLLTDRSLCE NRVVIDGNLI TSRAPGTATE
401: FALAIVEKLF GREKAVSVAK EFVFM

Best Arabidopsis Sequence Match ( AT3G14990.2 )
(BLAST)

001: MITVLRRGGA DVTVASVETQ VGVDACHGIK MVADTLLSDI TDSVFDLIVL PGGLPGGETL KNCKSLENMV KKQDSDGRLN AAICCAPALA LGTWGLLEGK
101: KATGYPVFME KLAATCATAV ESRVQIDGRI VTSRGPGTTI EFSITLIEQL FGKEKADEVS SILLLRPNPG EEFTFTELNQ TNWSFEDTPQ ILVPIAEESE
201: EIEAIALVDI LRRAKANVVI AAVGNSLEVE GSRKAKLVAE VLLDEVAEKS FDLIVLPGGL NGAQRFASCE KLVNMLRKQA EANKPYGGIC ASPAYVFEPN
301: GLLKGKKATT HPVVSDKLSD KSHIEHRVVV DGNVITSRAP GTAMEFSLAI VEKFYGREKA LQLGKATLV

Arabidopsis Description

DJ1AProtein DJ-1 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.