CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21993	Soybean	endoplasmic reticulum, nucleus	87.13	86.73
GSMUA_Achr8P19930_001	Banana	cytosol	61.61	71.66
VIT_19s0014g01520.t01	Wine grape	plastid	66.67	67.6
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	60.46	67.26
Bra039666.1-P	Field mustard	cytosol	60.69	67.18
Os06t0531200-01	Rice	plastid	60.69	67.01
Solyc07g062610.2.1	Tomato	plastid	60.0	66.75
CDY24104	Canola	cytosol	59.77	66.16
Bra030947.1-P	Field mustard	plastid	61.61	62.62
CDY02515	Canola	plastid	61.61	62.62
CDY59398	Canola	plastid	61.15	62.15
AT3G14990.1	Thale cress	cytosol	54.94	60.97
AT1G53280.1	Thale cress	plastid	61.15	60.73
Bra027286.1-P	Field mustard	cytosol	54.71	60.71
TraesCS7D01G329500.1	Wheat	golgi, plastid	60.23	60.23
CDX98521	Canola	cytosol	54.25	60.2
CDX97625	Canola	cytosol	54.25	60.2
EER89866	Sorghum	plastid	60.92	59.82
TraesCS7A01G349100.1	Wheat	plastid	59.77	59.77
OQU86107	Sorghum	cytosol	43.45	59.62
CDX95299	Canola	cytosol	53.56	59.59
CDX82455	Canola	cytosol, golgi, mitochondrion	53.56	59.44
Zm00001d046135_P001	Maize	plastid	59.54	59.27
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	53.33	59.18
CDX75800	Canola	cytosol, golgi, mitochondrion	53.1	58.93
Bra033480.1-P	Field mustard	cytosol	52.64	58.57
CDY23161	Canola	cytosol	52.64	58.57
TraesCS3B01G162300.1	Wheat	mitochondrion	54.71	56.0
TraesCS3D01G144800.1	Wheat	mitochondrion	54.71	55.87
Zm00001d039363_P001	Maize	mitochondrion	54.71	55.61
TraesCS7B01G233600.2	Wheat	mitochondrion	59.77	55.56
TraesCS3A01G142800.1	Wheat	mitochondrion	54.02	55.29
Os01t0217800-01	Rice	mitochondrion	53.33	54.21
CDY25999	Canola	golgi, plastid	60.23	53.04
TraesCS1D01G007700.1	Wheat	cytosol	50.11	47.29
KRH71131	Soybean	cytosol, mitochondrion, nucleus	33.1	46.6
TraesCS3D01G144900.1	Wheat	cytosol	40.92	45.18
TraesCS3A01G142700.1	Wheat	cytosol	40.92	44.95
Os01t0217500-01	Rice	cytosol	40.69	44.81
KRH50291	Soybean	plastid	45.98	44.44
OQU86110	Sorghum	extracellular, plasma membrane	40.46	41.31
VIT_15s0024g01260.t01	Wine grape	cytosol	18.39	33.2
HORVU3Hr1G049070.10	Barley	cytosol, nucleus, plasma membrane	8.28	17.56

Protein Annotations

EMBL:ACUP02007798	EnsemblPlants:KRH27320	EnsemblPlantsGene:GLYMA_12G228600	EntrezGene:100803116	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like
InterPro:DJ-1	InterPro:DJ-1/PfpI	InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965
ProteinID:KRH27320	ProteinID:KRH27320.1	SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI000233CBBC
UniProt:I1LV54	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:38853910..38857557

Molecular Weight (calculated)

46597.7 Da

IEP (calculated)

6.794

GRAVY (calculated)

0.137

Length

435 amino acids

Sequence
(BLAST)

001: MALRHLRFFP HTLPLTLTPT PNPNNSNRFS FFTPSLSSTT LMATAHKVLV PIADGTEPME AVITIDVLRR SGADVTVASA SDNLAVQALH GVKIIADAPV
101: RDVAATSFDL VALPGGLQGV ENLRDCKVLE GLVKKHVEDG RLYAAVCAAP AVVLGPWGLL NGKKATCYPA LMEKLAAYAA ATSESRVQVD GRVVTSRAPG
201: TTMEFAITLI EQLIGKEKAD EVAGPLVMHS NHDDEHTFKE FNPVQWTSDN PPKILVPIAN GSEEMEAVII IDILRRAKAK VVVASVEDKL EIVASRKVKL
301: EADMLLDEAA KLSYDLIVLP GGLGGAQTFA NSETLVSLLK KQRESNIYYG AICASPALVL EPHGLLKGKK ATAFPVMCNK LSDQSEVENR VVVDGNLITS
401: RGPGTSIEFA LAIVEKLFGR KLALELAKAV VFARP

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.