Factsheet for Zm00001d046135_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53280.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0531200-01	Rice	plastid	77.12	85.53
EER89866	Sorghum	plastid	85.13	83.97
TraesCS7D01G329500.1	Wheat	golgi, plastid	78.95	79.31
TraesCS7A01G349100.1	Wheat	plastid	78.72	79.08
HORVU7Hr1G079640.2	Barley	plastid	80.09	77.09
GSMUA_Achr8P19930_001	Banana	cytosol	63.16	73.8
TraesCS7B01G233600.2	Wheat	mitochondrion	77.57	72.44
PGSC0003DMT400032252	Potato	cytosol, peroxisome, plastid	58.81	65.73
Solyc07g062610.2.1	Tomato	plastid	58.35	65.22
Bra039666.1-P	Field mustard	cytosol	58.58	65.14
VIT_19s0014g01520.t01	Wine grape	plastid	63.62	64.8
CDY24104	Canola	cytosol	58.12	64.63
KRH21993	Soybean	endoplasmic reticulum, nucleus	59.73	59.73
KRH27320	Soybean	nucleus	59.27	59.54
AT1G53280.1	Thale cress	plastid	59.27	59.13
CDY59398	Canola	plastid	57.89	59.11
CDY02515	Canola	plastid	56.98	58.18
Bra030947.1-P	Field mustard	plastid	56.98	58.18
CDX95299	Canola	cytosol	51.72	57.8
AT3G14990.1	Thale cress	cytosol	51.49	57.4
Bra033480.1-P	Field mustard	cytosol	51.26	57.29
Bra027286.1-P	Field mustard	cytosol	51.26	57.14
CDY23161	Canola	cytosol	51.03	57.03
CDX98521	Canola	cytosol	50.8	56.63
CDX97625	Canola	cytosol	50.8	56.63
CDX82455	Canola	cytosol, golgi, mitochondrion	50.8	56.63
Bra001577.1-P	Field mustard	cytosol, golgi, mitochondrion	50.57	56.38
CDX75800	Canola	cytosol, golgi, mitochondrion	50.34	56.12
Zm00001d039363_P001	Maize	mitochondrion	53.78	54.91
CDY25999	Canola	golgi, plastid	58.58	51.82
VIT_15s0024g01260.t01	Wine grape	cytosol	18.76	34.02
Zm00001d031784_P003	Maize	plastid	41.88	31.44

Protein Annotations

EnsemblPlants:Zm00001d046135_P001	EnsemblPlants:Zm00001d046135_T001	EnsemblPlantsGene:Zm00001d046135	Gene3D:3.40.50.880	InterPro:Class_I_gatase-like	InterPro:DJ-1
InterPro:DJ-1/PfpI	InterPro:IPR029062	PANTHER:PTHR43444	PANTHER:PTHR43444:SF8	PFAM:PF01965	ProteinID:AQL03752.1
SEG:seg	SUPFAM:SSF52317	TIGRFAMs:TIGR01383	UniParc:UPI000221FFE2	UniProt:K7VUU0	MapMan:35.1

Description

Protein DJ-1 homolog B

Coordinates

chr9:-:65831648..65845159

Molecular Weight (calculated)

46775.2 Da

IEP (calculated)

8.109

GRAVY (calculated)

0.034

Length

437 amino acids

Sequence
(BLAST)

001: MATRSLTSAL PLSRTPRVPS HRPSLRRLQT LTRALTSSSP QAMASSPTPK KVLVPIANGT EPMEAVITID VLRRAGADVA VASVEPGATS VAASWGIKLT
101: ADALLADLAD DEFDLISLPG GMPGSSTFGE CKVLEKMVKK HVEKGKLYAA ICAAPAMTLG TWGLLNGLKA TCYPSFIDKL PSEVHAVESR VQIDGKCMTS
201: RGPGTAMEYS VILVEQLYGK EKAKEVAGPM VMRPQHGVEF SMKEVNSTSW NVGETPNILV PIANGTEEME ATMILDILRR AKANVVVASL EDKLEIVASR
301: KVKMIADVLL DDALKEQYDL ILLPGGLGGA EAYAKSDKLM DLIKKQAAAN RLYGAICASP AIALEPHGLL KGKKVTSYPA MWNKLADQSE CNNRVIVDGN
401: LITSQGPGTS MEFSLAIVEK LFGRERALEL AKSMVFI

Best Arabidopsis Sequence Match ( AT1G53280.1 )
(BLAST)

001: MASSSLCHRY FNKITVTPFF NTKKLHHYSP RRISLRVNRR SFSISATMSS STKKVLIPVA HGTEPFEAVV MIDVLRRGGA DVTVASVENQ VGVDACHGIK
101: MVADTLLSDI TDSVFDLIML PGGLPGGETL KNCKPLEKMV KKQDTDGRLN AAICCAPALA FGTWGLLEGK KATCYPVFME KLAACATAVE SRVEIDGKIV
201: TSRGPGTTME FSVTLVEQLL GKEKAVEVSG PLVMRPNPGD EYTITELNQV SWSFEGTPQI LVPIADGSEE MEAVAIIDVL KRAKANVVVA ALGNSLEVVA
301: SRKVKLVADV LLDEAEKNSY DLIVLPGGLG GAEAFASSEK LVNMLKKQAE SNKPYGAICA SPALVFEPHG LLKGKKATAF PAMCSKLTDQ SHIEHRVLVD
401: GNLITSRGPG TSLEFALAIV EKFYGREKGL QLSKATLV

Arabidopsis Description

DJ1BProtein DJ-1 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.